radhika [Mon, 17 Nov 2014 22:27:30 +0000 (17:27 -0500)]
Merge branch 'master' into 4194-keep-logging
radhika [Mon, 17 Nov 2014 22:26:39 +0000 (17:26 -0500)]
4194: MakeLoggingRESTRouter returns a pointer rather than the struct.
radhika [Mon, 17 Nov 2014 22:13:03 +0000 (17:13 -0500)]
4194: rename wrapper
Ward Vandewege [Mon, 17 Nov 2014 22:09:54 +0000 (17:09 -0500)]
Be a bit smarter about handling the dynamic dns resolver records for
compute nodes on api server startup.
refs #4461
radhika [Mon, 17 Nov 2014 22:02:00 +0000 (17:02 -0500)]
4194: rename RESTRouterWrapper as LoggingRESTRouter
radhika [Mon, 17 Nov 2014 21:53:33 +0000 (16:53 -0500)]
Merge branch 'master' into 4194-keep-logging
radhika [Mon, 17 Nov 2014 17:35:22 +0000 (12:35 -0500)]
closes #4024
Merge branch '4024-pipeline-instances-scroll'
radhika [Mon, 17 Nov 2014 17:02:52 +0000 (12:02 -0500)]
Merge branch '4024-pipeline-instances-scroll' of git.curoverse.com:arvados into 4024-pipeline-instances-scroll
Tom Clegg [Mon, 17 Nov 2014 16:46:30 +0000 (11:46 -0500)]
4024: Make items_available, result_limit, and result_offset work for empty result sets.
Tom Clegg [Mon, 17 Nov 2014 16:05:14 +0000 (11:05 -0500)]
Merge branch '3824-task-work' closes #3824
Tom Clegg [Mon, 17 Nov 2014 15:55:59 +0000 (10:55 -0500)]
3824: Check whether there is anything to install before trying to lock $destdir.
Peter Amstutz [Mon, 17 Nov 2014 15:51:17 +0000 (10:51 -0500)]
Merge branch '4535-configure-api-host-url' closes #4535
radhika [Mon, 17 Nov 2014 15:05:36 +0000 (10:05 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
Tom Clegg [Mon, 17 Nov 2014 14:32:44 +0000 (09:32 -0500)]
Merge branch '4388-workbench-update' closes #4388
radhika [Mon, 17 Nov 2014 02:28:47 +0000 (21:28 -0500)]
4024: update test assert
radhika [Mon, 17 Nov 2014 01:58:34 +0000 (20:58 -0500)]
4024: add test assertion to check no error in page.
radhika [Sun, 16 Nov 2014 21:18:56 +0000 (16:18 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
radhika [Sun, 16 Nov 2014 21:18:45 +0000 (16:18 -0500)]
Merge branch '4024-pipeline-instances-scroll' of git.curoverse.com:arvados into 4024-pipeline-instances-scroll
radhika [Sun, 16 Nov 2014 20:57:22 +0000 (15:57 -0500)]
Merge branch 'master' into 4194-keep-logging
radhika [Sun, 16 Nov 2014 20:51:37 +0000 (15:51 -0500)]
4194: logging writer copies / appends passed in data into its own buffer.
Ward Vandewege [Sun, 16 Nov 2014 18:54:47 +0000 (13:54 -0500)]
Make our dynamic dns update system for compute nodes more generic.
refs #4461
Ward Vandewege [Sun, 16 Nov 2014 13:25:27 +0000 (08:25 -0500)]
Fix sdk/go/keepclient test race condition
This closes #4395
Tom Clegg [Sun, 16 Nov 2014 09:16:20 +0000 (04:16 -0500)]
3824: Run build_script (and create *_WORK) inside the container.
Tom Clegg [Sun, 16 Nov 2014 04:48:32 +0000 (23:48 -0500)]
3400: Do not fetch API results just for the sake of looking up resource_class.
Tom Clegg [Sun, 16 Nov 2014 04:47:21 +0000 (23:47 -0500)]
4024: @limit override must happen before find_objects_for_index.
Tom Clegg [Sun, 16 Nov 2014 04:46:09 +0000 (23:46 -0500)]
3400: Do not fetch_multiple_pages in #index actions.
Tom Clegg [Sun, 16 Nov 2014 02:38:54 +0000 (21:38 -0500)]
4024: Merge branch '4388-workbench-update' into 4024-pipeline-instances-scroll
Tom Clegg [Sun, 16 Nov 2014 02:18:47 +0000 (21:18 -0500)]
4024: Merge branch 'master' into 4024-pipeline-instances-scroll
Tom Clegg [Sun, 16 Nov 2014 01:55:30 +0000 (20:55 -0500)]
4388: Fix typo
Tom Clegg [Sun, 16 Nov 2014 01:52:39 +0000 (20:52 -0500)]
4388: Update bundle
Tom Clegg [Sat, 15 Nov 2014 00:36:31 +0000 (19:36 -0500)]
4388: Fix javascript errors.
radhika [Sat, 15 Nov 2014 15:55:01 +0000 (10:55 -0500)]
4194: update keepstore and handler_test to make wrapper instance rather than the two step process of creating REST router and then the wrapper.
radhika [Sat, 15 Nov 2014 03:27:29 +0000 (22:27 -0500)]
4194: refactor router wrapper into a separate file.
radhika [Sat, 15 Nov 2014 02:32:47 +0000 (21:32 -0500)]
Merge branch 'master' into 4194-keep-logging
radhika [Sat, 15 Nov 2014 02:29:23 +0000 (21:29 -0500)]
4194: refactor REST Router wrapper into a separate package named keep_utils in keep directory.
Tom Clegg [Fri, 14 Nov 2014 23:07:20 +0000 (18:07 -0500)]
Relax activesupport dependency to accommodate 4.x. refs #4388
radhika [Fri, 14 Nov 2014 20:32:04 +0000 (15:32 -0500)]
4194: rename RESTRouterWrapper
radhika [Fri, 14 Nov 2014 20:08:44 +0000 (15:08 -0500)]
4194: remove some more old log statements
radhika [Fri, 14 Nov 2014 19:50:59 +0000 (14:50 -0500)]
4194: since LoggingResponseWriter is doing the logging, remove some of the old log statements that are now covered by the LoggingResponseWriter in keepstore handlers.
Peter Amstutz [Fri, 14 Nov 2014 19:38:45 +0000 (14:38 -0500)]
4535: Change default to false because ~ indicates "must be filled in".
Peter Amstutz [Fri, 14 Nov 2014 19:33:55 +0000 (14:33 -0500)]
4535: Add default_url_options to application controller that consults
Rails.configuration. Added entry with documentation to
application.yml.default.
radhika [Fri, 14 Nov 2014 19:07:17 +0000 (14:07 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
radhika [Fri, 14 Nov 2014 16:03:55 +0000 (11:03 -0500)]
4194: improve logging when large block is retrieved.
radhika [Fri, 14 Nov 2014 14:50:39 +0000 (09:50 -0500)]
4194: Add LoggingResponseWriter and RESTRouter wrapper. Update keepstore and handler_test to use the router wrapper.
Tom Clegg [Fri, 14 Nov 2014 02:47:29 +0000 (21:47 -0500)]
4024: Use filterable-control input values (if any) when first loading dynamic content.
radhika [Fri, 14 Nov 2014 02:29:17 +0000 (21:29 -0500)]
closes #3177
Merge branch '3177-collection-choose-files'
radhika [Fri, 14 Nov 2014 02:12:41 +0000 (21:12 -0500)]
3177: use no left padding when collection files preview panel is used in file chooser dialog.
radhika [Fri, 14 Nov 2014 01:45:50 +0000 (20:45 -0500)]
Merge branch 'master' into 3177-collection-choose-files
Tom Clegg [Thu, 13 Nov 2014 22:27:51 +0000 (17:27 -0500)]
4024: Add test for double-load bug.
Tom Clegg [Thu, 13 Nov 2014 21:21:44 +0000 (16:21 -0500)]
4024: Remove unused /pipeline_instances/?search=x support.
Tom Clegg [Thu, 13 Nov 2014 14:47:54 +0000 (09:47 -0500)]
Merge branch '2853-rendezvous' closes #2853
Tom Clegg [Thu, 13 Nov 2014 14:27:46 +0000 (09:27 -0500)]
2853: Merge branch 'master' into 2853-rendezvous
Brett Smith [Thu, 13 Nov 2014 13:56:33 +0000 (08:56 -0500)]
Merge branch '4027-api-sdk-version-wip'
Refs #4027. Closes #4489.
Brett Smith [Tue, 11 Nov 2014 20:33:40 +0000 (15:33 -0500)]
4027: Add arvados_sdk_version runtime constraint to API server.
Crunch will use this information to provide a specific SDK version in
the runtime environment.
radhika [Thu, 13 Nov 2014 02:49:59 +0000 (21:49 -0500)]
3177: update test to select row in preview panel
radhika [Thu, 13 Nov 2014 02:19:35 +0000 (21:19 -0500)]
Merge branch 'master' into 3177-collection-choose-files
radhika [Thu, 13 Nov 2014 02:19:01 +0000 (21:19 -0500)]
3177: file selection
Tom Clegg [Wed, 12 Nov 2014 23:10:17 +0000 (18:10 -0500)]
2853: Use mock from KeepClientServiceTestCase for rendezvous tests
instead of intruding on KeepClient's private instance variables.
Ward Vandewege [Wed, 12 Nov 2014 22:22:31 +0000 (17:22 -0500)]
Update arv-tag --help text in arv subcommands documentation.
refs #4486
Ward Vandewege [Wed, 12 Nov 2014 22:20:31 +0000 (17:20 -0500)]
Make arv-tag print usage when --help is given. Also, fix typo in usage lines.
No issue #
Ward Vandewege [Wed, 12 Nov 2014 22:19:39 +0000 (17:19 -0500)]
Remove some redundant lines from sdk/bin/arv
No issue #
Tom Clegg [Wed, 12 Nov 2014 21:54:36 +0000 (16:54 -0500)]
2853: Avoid using reserved word "hash" as a variable name.
Tom Clegg [Wed, 12 Nov 2014 21:53:39 +0000 (16:53 -0500)]
2853: Fix reference to reference set.
Tom Clegg [Wed, 12 Nov 2014 21:53:00 +0000 (16:53 -0500)]
2853: Use Md5String() in getWeight().
Tom Clegg [Wed, 12 Nov 2014 21:52:21 +0000 (16:52 -0500)]
2853: Remove redundant test case.
Tim Pierce [Wed, 12 Nov 2014 21:35:31 +0000 (16:35 -0500)]
Merge branch '3609-run-command-bugfix'
Refs #3609.
Tim Pierce [Wed, 12 Nov 2014 21:07:15 +0000 (16:07 -0500)]
3609: fix "NameError: name 'rcode' is not defined"
If run-command raises an exception in the main 'try' loop before any
subprocesses have run, rcode will not be defined and "not any([status !=
0 for status in rcode.values()])" will raise a confusing "NameError:
name 'rcode' is not defined" exception.
Solution is to define rcode before the try/except block and to make sure
'success' is False if rcode is completely empty.
radhika [Wed, 12 Nov 2014 20:47:27 +0000 (15:47 -0500)]
Merge branch 'master' into 3177-collection-choose-files
Conflicts:
apps/workbench/app/views/collections/_choose_rows.html.erb
radhika [Wed, 12 Nov 2014 20:35:23 +0000 (15:35 -0500)]
3177: in file chooser mode, allow row selection
Tom Clegg [Wed, 12 Nov 2014 18:59:59 +0000 (13:59 -0500)]
2853: Merge branch 'master' into 2853-rendezvous
Conflicts:
sdk/python/arvados/keep.py
Brett Smith [Wed, 12 Nov 2014 18:59:14 +0000 (13:59 -0500)]
Merge branch '4380-node-manager-computenode-reorg-wip'
Refs #4380. Closes #4496.
Brett Smith [Tue, 11 Nov 2014 22:23:14 +0000 (17:23 -0500)]
4380: Reorganize arvnodeman.computenode.
This makes the hierarchy a little richer:
* arvnodeman.computenode.driver has all the cloud driver wrappers.
* arvnodeman.computenode.dispatch will be just like that, except it
will consider local dispatch concerns. For example, I'm going to
add a SLURM submodule here to take care of draining.
* arvnodeman.computenode still has utility functions and
ShutdownTimer.
Tom Clegg [Wed, 12 Nov 2014 18:42:51 +0000 (13:42 -0500)]
Merge branch '4434-collation' closes #4434
Peter Amstutz [Wed, 12 Nov 2014 18:42:13 +0000 (13:42 -0500)]
Merge branch '3400-workbench-all-items' closes #3400
Peter Amstutz [Wed, 12 Nov 2014 18:14:10 +0000 (13:14 -0500)]
Merge branch 'master' into 3400-workbench-all-items
Tom Clegg [Fri, 7 Nov 2014 03:52:44 +0000 (22:52 -0500)]
3400: test limit between server maxpagesize and 2x server maxpagesize.
Conflicts:
apps/workbench/test/unit/arvados_resource_list_test.rb
radhika [Wed, 12 Nov 2014 17:39:08 +0000 (12:39 -0500)]
Merge branch 'master' into 3177-collection-choose-files
Brett Smith [Wed, 12 Nov 2014 17:08:13 +0000 (12:08 -0500)]
Bugfix bad exception name in PySDK util.is_hex.
No issue #.
radhika [Wed, 12 Nov 2014 16:53:01 +0000 (11:53 -0500)]
Merge branch 'master' into 4024-pipeline-instances-scroll
radhika [Wed, 12 Nov 2014 16:52:33 +0000 (11:52 -0500)]
4024: move the search box to the top
radhika [Wed, 12 Nov 2014 16:43:23 +0000 (11:43 -0500)]
Merge branch '4024-pipeline-instances-scroll' of git.curoverse.com:arvados into 4024-pipeline-instances-scroll
Peter Amstutz [Wed, 12 Nov 2014 16:39:41 +0000 (11:39 -0500)]
3400: Stub out obsolete #links_for and remove result_links and related test.
Set @result_limit and @result_offset to nil unless @fetch_multiple_pages ==
false. Add test for limit > default page size.
Tim Pierce [Wed, 12 Nov 2014 16:17:49 +0000 (11:17 -0500)]
Merge branch '3857-python-sdk-timeout-bugfix'
Fixes #3857.
Tim Pierce [Wed, 12 Nov 2014 16:13:36 +0000 (11:13 -0500)]
3857: fix python-requests dependency
Multiple timeout support in python-requests is only supported in
versions 2.4.0 or later.
Brett Smith [Wed, 12 Nov 2014 14:57:44 +0000 (09:57 -0500)]
Merge branch '3603-pysdk-file-api-wip'
Refs #3603. Closes #4316.
Brett Smith [Wed, 12 Nov 2014 14:42:17 +0000 (09:42 -0500)]
3603: PySDK Collection objects support file-like APIs.
This commit adds an open() method to CollectionReader and
CollectionWriter. They mimic the built-in open(), returning objects
that implement as much as the Python file API as I can reasonably
manage.
There are a couple of backwards-incompatible changes to
StreamFileReader here:
* seek() now defaults to SEEK_CUR rather than SEEK_SET behavior.
* readlines() returns a list, and no longer supports decompression.
These changes bring the object closer to a file-like object. We
reviewed our existing Python code, including known Crunch scripts from
users. Nobody was using seek(), and nobody was obviously relying on
the decompression behavior of readlines(). So we believe this is
reasonably safe.
(Contrast name(), which lots of things are using, so we provide a
backward compatibility shim for it.)
Brett Smith [Wed, 12 Nov 2014 14:38:26 +0000 (09:38 -0500)]
3603: Clean up PySDK imports.
Sort; remove unused imports.
Brett Smith [Fri, 24 Oct 2014 15:23:09 +0000 (11:23 -0400)]
3603: Fix context methods for PySDK Collection objects.
radhika [Wed, 12 Nov 2014 14:02:44 +0000 (09:02 -0500)]
Merge branch 'master' into 3177-collection-choose-files
Tom Clegg [Wed, 12 Nov 2014 06:15:35 +0000 (01:15 -0500)]
4024: Fix "compare pipelines" button.
Ward Vandewege [Wed, 12 Nov 2014 02:23:03 +0000 (21:23 -0500)]
Fix broken doc link.
refs #4486
Ward Vandewege [Wed, 12 Nov 2014 01:36:07 +0000 (20:36 -0500)]
Merge branch '4486-document-arv'
refs #4486
Ward Vandewege [Wed, 12 Nov 2014 01:35:08 +0000 (20:35 -0500)]
Remove trailing whitespace.
refs #4486
Ward Vandewege [Wed, 12 Nov 2014 01:34:04 +0000 (20:34 -0500)]
Merge branch 'master' into 4486-document-arv
refs #4486
Ward Vandewege [Tue, 11 Nov 2014 22:21:24 +0000 (17:21 -0500)]
Add TCPKeepAlive and ServerAliveInterval ssh options to the .ssh/config
snippet that Workbench suggests.
no issue #
Ward Vandewege [Tue, 11 Nov 2014 21:53:02 +0000 (16:53 -0500)]
Add some basic documentation for the arv subcommands.
refs #4486
Tom Clegg [Tue, 11 Nov 2014 21:42:39 +0000 (16:42 -0500)]
2853: Remove shuffledServiceRoots() wrapper.
Tim Pierce [Tue, 11 Nov 2014 21:32:09 +0000 (16:32 -0500)]
Merge branch '4294-node-manager-min-nodes'
Fixes #4294.
Tom Clegg [Tue, 11 Nov 2014 21:30:58 +0000 (16:30 -0500)]
2853: Add comment.
Tim Pierce [Tue, 11 Nov 2014 21:30:04 +0000 (16:30 -0500)]
Merge branch '3857-python-sdk-timeouts'
Fixes #3857.
projects / arvados.git / log