Tom Clegg [Wed, 30 Jul 2014 17:48:52 +0000 (13:48 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search
radhika [Wed, 30 Jul 2014 16:04:11 +0000 (12:04 -0400)]
3016: Update per Tom's review feedback.
radhika [Wed, 30 Jul 2014 15:36:55 +0000 (11:36 -0400)]
Merge branch 'master' into 3016-pipeline-template-search-string
Tom Clegg [Wed, 30 Jul 2014 14:35:09 +0000 (10:35 -0400)]
Report validation error messages in server log. refs #3415
radhika [Wed, 30 Jul 2014 14:32:43 +0000 (10:32 -0400)]
3193: update the ssh popup to not require name.
radhika [Wed, 30 Jul 2014 14:03:04 +0000 (10:03 -0400)]
Merge branch 'master' into 3193-manage-account
Tom Clegg [Tue, 29 Jul 2014 23:28:07 +0000 (19:28 -0400)]
3235: Fix missed filter update after paste event.
Tom Clegg [Tue, 29 Jul 2014 23:19:02 +0000 (19:19 -0400)]
3235: Don't blow up when calling 404 from ActionsController.
Before:
At .../app/views/application/404.html.erb:17
#<ActionController::UrlGenerationError: No route matches {:action=>"index", :controller=>"actions"}>
After:
Use the class_name deduced from the uuid to determine the most
likely controller, instead of assuming the current controller is the
right one.
Tom Clegg [Tue, 29 Jul 2014 23:13:42 +0000 (19:13 -0400)]
3235: Do not bring up search dialog until enter/click in top nav
widget. Add special case "feeling lucky" behavior when the search
string is an Arvados UUID.
Ward Vandewege [Tue, 29 Jul 2014 21:54:43 +0000 (23:54 +0200)]
Documentation fix: add a link to the Keep installation page in the left
nav bar under "Manual installation".
no issue #
Ward Vandewege [Tue, 29 Jul 2014 21:48:38 +0000 (23:48 +0200)]
Whitespace fix in docker install documentation.
no issue #
Ward Vandewege [Tue, 29 Jul 2014 20:34:14 +0000 (22:34 +0200)]
Merge branch '3219-further-docker-improvements'
refs #3219
Ward Vandewege [Tue, 29 Jul 2014 20:32:56 +0000 (22:32 +0200)]
Merge branch 'master' into 3219-further-docker-improvements
radhika [Tue, 29 Jul 2014 20:07:45 +0000 (16:07 -0400)]
3193: improve virtual machines section to add a sample.
radhika [Tue, 29 Jul 2014 19:31:44 +0000 (15:31 -0400)]
3193: split ssh section into two sections
radhika [Tue, 29 Jul 2014 19:15:01 +0000 (15:15 -0400)]
3193: show only a portion of the ssh key so that the page does not have to scroll too far down when there are multiple ssh keys configured.
Tom Clegg [Tue, 29 Jul 2014 18:44:10 +0000 (14:44 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search
radhika [Tue, 29 Jul 2014 18:09:58 +0000 (14:09 -0400)]
3193: minor text updates in the UI panels.
radhika [Tue, 29 Jul 2014 17:44:13 +0000 (13:44 -0400)]
3193: add head_uuid is a arvados#repository filter when looking for recpositories.
radhika [Tue, 29 Jul 2014 17:29:56 +0000 (13:29 -0400)]
Merge branch 'master' into 3193-manage-account
radhika [Tue, 29 Jul 2014 17:25:45 +0000 (13:25 -0400)]
3016: schema doc updated with new search_for attribute details.
Tom Clegg [Tue, 29 Jul 2014 15:58:45 +0000 (11:58 -0400)]
Merge branch '3351-keep-timeout' closes #3351
radhika [Tue, 29 Jul 2014 15:03:37 +0000 (11:03 -0400)]
2985: forgot to use ruby's cool syntax
radhika [Tue, 29 Jul 2014 14:38:33 +0000 (10:38 -0400)]
2985: pass move items only when available
Tom Clegg [Tue, 29 Jul 2014 14:35:26 +0000 (10:35 -0400)]
3351: Propagate caller-provided timeout from KeepClient to KeepWriterThread.
Also, use the timeout in the sign_for_old_server block (even though
this branch is unlikely to be used in real life now that the old Keep
server has been replaced).
radhika [Tue, 29 Jul 2014 14:28:06 +0000 (10:28 -0400)]
Merge branch 'master' into 2985-selection-button-move-copy
Conflicts:
apps/workbench/config/routes.rb
radhika [Tue, 29 Jul 2014 14:14:18 +0000 (10:14 -0400)]
Merge branch 'master' into 3193-manage-account
Tom Clegg [Tue, 29 Jul 2014 14:00:03 +0000 (10:00 -0400)]
3235: Fix attribute keys. refs #3235
Tom Clegg [Tue, 29 Jul 2014 02:50:37 +0000 (22:50 -0400)]
Merge branch '3235-top-nav-site-search' refs #3235
Tom Clegg [Tue, 29 Jul 2014 02:49:07 +0000 (22:49 -0400)]
3235: Replace link with search widget in top nav.
Tom Clegg [Tue, 29 Jul 2014 01:18:40 +0000 (21:18 -0400)]
Do not show non-project groups in groups directory. no issue #
Tom Clegg [Tue, 29 Jul 2014 01:14:33 +0000 (21:14 -0400)]
Fix TypeError: Got an unexpected keyword argument "uuid". refs #3235
Tom Clegg [Tue, 29 Jul 2014 00:30:10 +0000 (20:30 -0400)]
3235: Fix hover highlighting on projects dropdowns.
Tom Clegg [Tue, 29 Jul 2014 00:12:42 +0000 (20:12 -0400)]
3235: Show selected project in project-filter dropdown title.
Tom Clegg [Mon, 28 Jul 2014 23:23:04 +0000 (19:23 -0400)]
Do not return non-project groups in groups#contents. refs #3235
Ward Vandewege [Mon, 28 Jul 2014 22:46:15 +0000 (00:46 +0200)]
Merge branch 'master' into 3219-further-docker-improvements
Ward Vandewege [Mon, 28 Jul 2014 22:43:14 +0000 (00:43 +0200)]
Fix the auto_admin_user feature; it was broken by accident in
commit:
5f651773
refs #3219
Tom Clegg [Mon, 28 Jul 2014 21:52:51 +0000 (17:52 -0400)]
3235: Fix infinite scroll broken by merge.
Tom Clegg [Mon, 28 Jul 2014 21:20:38 +0000 (17:20 -0400)]
3235: Move filter-by-project to left side.
Tom Clegg [Mon, 28 Jul 2014 21:12:52 +0000 (17:12 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search
Conflicts:
apps/workbench/app/views/layouts/application.html.erb
Tom Clegg [Mon, 28 Jul 2014 21:10:16 +0000 (17:10 -0400)]
Merge branch '3235-all-contents' refs #3235
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.
Tom Clegg [Mon, 28 Jul 2014 19:56:41 +0000 (15:56 -0400)]
3235: Remove errant action exemption.
Tom Clegg [Mon, 28 Jul 2014 19:45:23 +0000 (15:45 -0400)]
3235: Merge branch 'master' into 3235-top-nav-site-search
Conflicts:
apps/workbench/app/assets/javascripts/infinite_scroll.js
apps/workbench/app/views/application/_choose.html.erb
apps/workbench/app/views/layouts/application.html.erb
Peter Amstutz [Mon, 28 Jul 2014 19:44:23 +0000 (15:44 -0400)]
Fixed one character typo "ghttp" -> "http" caught by linkchecker.
Peter Amstutz [Mon, 28 Jul 2014 18:58:03 +0000 (14:58 -0400)]
Described with how to use "arv edit" in "Writing a pipeline". Switched order of paragraphs in "introduction to crunch". Grammar and wording tweaks.
radhika [Mon, 28 Jul 2014 18:22:27 +0000 (14:22 -0400)]
Merge branch 'master' into 2985-selection-button-move-copy
radhika [Mon, 28 Jul 2014 18:22:01 +0000 (14:22 -0400)]
2985: fix typo
Peter Amstutz [Mon, 28 Jul 2014 13:13:59 +0000 (09:13 -0400)]
Set $CRUNCH_SRC correctly when running the Docker container. refs #3370
radhika [Mon, 28 Jul 2014 01:55:06 +0000 (21:55 -0400)]
2985: move selections to chosen project
radhika [Mon, 28 Jul 2014 01:46:44 +0000 (21:46 -0400)]
2985: move selection items to the chosen project
Tom Clegg [Sun, 27 Jul 2014 22:35:46 +0000 (18:35 -0400)]
3235: Bind Esc key to close modals.
Tom Clegg [Sun, 27 Jul 2014 22:28:18 +0000 (18:28 -0400)]
3235: Focus search box when chooser modal appears.
Tom Clegg [Sun, 27 Jul 2014 22:22:53 +0000 (18:22 -0400)]
3235: Show project filter by default (i.e., unless by_project=false).
Tom Clegg [Sun, 27 Jul 2014 22:03:13 +0000 (18:03 -0400)]
3235: Fix "no filter / all projects" option.
Tom Clegg [Sun, 27 Jul 2014 21:58:17 +0000 (17:58 -0400)]
3235: Fix multiple-select.
Tom Clegg [Sun, 27 Jul 2014 21:48:28 +0000 (17:48 -0400)]
3235: Make filter-by-project play nice with infinite scroll.
Tom Clegg [Sun, 27 Jul 2014 19:34:31 +0000 (15:34 -0400)]
3235: Hide section header rows for empty sections. closes #3377
Tom Clegg [Sun, 27 Jul 2014 19:22:38 +0000 (15:22 -0400)]
3235: Fix infinite scroll in Search chooser.
Tom Clegg [Sun, 27 Jul 2014 19:19:49 +0000 (15:19 -0400)]
3235: Infinite scroll error handling: Show error message and "Retry" button
instead of immediately repeating the failed request ad infinitum.
Tom Clegg [Sat, 26 Jul 2014 21:23:42 +0000 (17:23 -0400)]
3235: Skip data-remote links in smoke test. They might not know format=html.
Tom Clegg [Sat, 26 Jul 2014 21:08:45 +0000 (17:08 -0400)]
3235: Show multiple object types in top-nav Search modal.
Tom Clegg [Sat, 26 Jul 2014 18:53:17 +0000 (14:53 -0400)]
3351: Fix CollectionReader usage in arv-ls.
Tom Clegg [Sat, 26 Jul 2014 18:51:19 +0000 (14:51 -0400)]
3351: Add comment about SSL timeouts.
Tom Clegg [Sat, 26 Jul 2014 18:49:02 +0000 (14:49 -0400)]
3351: Clean up some excess indentation.
Tom Clegg [Sat, 26 Jul 2014 18:48:13 +0000 (14:48 -0400)]
3351: Catch SSLError and show warning instead of stack trace.
Tom Clegg [Sat, 26 Jul 2014 18:17:43 +0000 (14:17 -0400)]
3351: Retry failed threads (servers) if replication is too low after one pass.
radhika [Sat, 26 Jul 2014 17:14:01 +0000 (13:14 -0400)]
Merge branch 'master' into 3193-manage-account
Conflicts:
apps/workbench/app/views/layouts/application.html.erb
Peter Amstutz [Sat, 26 Jul 2014 03:42:40 +0000 (23:42 -0400)]
3232: Reorganized user guide
Major changes:
* Now separate sections for how to use Arvados and how to develop for Arvados
* Running a pipeline in workbench tutorial is simpler, involves fewer steps
* New example pipelines which are biologically relevant
* Working with data is its own section, and directs user to instructions on
installing Python SDK in order to upload data remotely
* Includes docker_image runtime constraint in examples
* Introduces "run-command" wrapper before writing a script with the Python SDK
* Added font awesome CSS and glyphs so documentation can use the same icons as Workbench.
radhika [Sat, 26 Jul 2014 03:07:06 +0000 (23:07 -0400)]
Merge branch 'master' into 2985-selection-button-move-copy
radhika [Sat, 26 Jul 2014 01:34:42 +0000 (21:34 -0400)]
refs #3138
Merge branch '3138-wiselinks'
radhika [Sat, 26 Jul 2014 01:33:50 +0000 (21:33 -0400)]
3138: test passing as is
radhika [Sat, 26 Jul 2014 01:24:04 +0000 (21:24 -0400)]
Merge branch 'master' into 3138-wiselinks
Conflicts:
apps/workbench/app/views/layouts/application.html.erb
Tom Clegg [Fri, 25 Jul 2014 22:42:18 +0000 (18:42 -0400)]
3351: Improve "already uploading" message (and send to stderr, not stdout).
Tom Clegg [Fri, 25 Jul 2014 22:36:38 +0000 (18:36 -0400)]
3351: Do not use resume cache at all if --no-resume flag is given.
radhika [Fri, 25 Jul 2014 21:56:51 +0000 (17:56 -0400)]
Merge branch 'master' into 3138-wiselinks
radhika [Fri, 25 Jul 2014 21:55:41 +0000 (17:55 -0400)]
3138: When wiselinks is initialized, selection.js does not work. Since we want to stop using selection.js in the near future, let's not initialize wiselinks object for now.
Tom Clegg [Fri, 25 Jul 2014 21:42:43 +0000 (17:42 -0400)]
3351: Set PUT request timeout to 60 seconds.
Tom Clegg [Fri, 25 Jul 2014 20:22:54 +0000 (16:22 -0400)]
Merge branch '3286-home-button' closes #3286
Tom Clegg [Fri, 25 Jul 2014 19:26:31 +0000 (15:26 -0400)]
3286: Split Home/Projects thing into Home button and Projects dropdown.
radhika [Fri, 25 Jul 2014 18:11:17 +0000 (14:11 -0400)]
3193: Show name column in the ssh key section.
Tom Clegg [Fri, 25 Jul 2014 17:51:51 +0000 (13:51 -0400)]
Do not remove /dev/stdout on interrupt signal. No issue #
Tom Clegg [Fri, 25 Jul 2014 17:49:27 +0000 (13:49 -0400)]
3235: Add test case.
radhika [Fri, 25 Jul 2014 17:39:06 +0000 (13:39 -0400)]
3193: disable submit button in popup if either name or public key are empty.
radhika [Fri, 25 Jul 2014 15:44:01 +0000 (11:44 -0400)]
3193: add note if there are no ssh keys configured
radhika [Fri, 25 Jul 2014 15:13:29 +0000 (11:13 -0400)]
3193: Move "SSH keys" and "API tokens" from notifications menu into settings gear menu. These are now available only for admin users.
radhika [Fri, 25 Jul 2014 14:51:32 +0000 (10:51 -0400)]
Merge branch 'master' into 3193-manage-account
radhika [Fri, 25 Jul 2014 14:51:02 +0000 (10:51 -0400)]
3193: add ssh key using popup
Brett Smith [Fri, 25 Jul 2014 12:04:33 +0000 (08:04 -0400)]
Merge branch 'staging'
Closes #3315. Thanks Guillermo!
Guillermo Carrasco [Wed, 9 Jul 2014 19:02:27 +0000 (15:02 -0400)]
Create temporary directory if it does not exist
Tom Clegg [Fri, 25 Jul 2014 02:10:30 +0000 (22:10 -0400)]
3235: Fix SQL query.
Tom Clegg [Fri, 25 Jul 2014 01:47:43 +0000 (21:47 -0400)]
3349: Do not override working "test" defaults in example config.
Tom Clegg [Fri, 25 Jul 2014 01:26:37 +0000 (21:26 -0400)]
3349: Add default blob_signing_key for test environment.
Tom Clegg [Fri, 25 Jul 2014 01:23:16 +0000 (21:23 -0400)]
3349: Remove duplicate keys in default yml.
Tom Clegg [Fri, 25 Jul 2014 01:10:57 +0000 (21:10 -0400)]
3349: Merge branch 'master' into 3349-install-docs
Tom Clegg [Fri, 25 Jul 2014 00:40:33 +0000 (20:40 -0400)]
3349: Update to ruby 2.1.2
Tom Clegg [Fri, 25 Jul 2014 00:40:16 +0000 (20:40 -0400)]
3349: Consolidate comments in application.default.yml
Tom Clegg [Thu, 24 Jul 2014 23:03:35 +0000 (19:03 -0400)]
3235: Split GroupsController#contents logic out to load_searchable_objects.
projects / arvados.git / log