arvados.git
4 years agoBump nokogiri from 1.10.2 to 1.10.8 in /services/api
dependabot[bot] [Tue, 25 Feb 2020 08:04:57 +0000 (08:04 +0000)]
Bump nokogiri from 1.10.2 to 1.10.8 in /services/api

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.2 to 1.10.8.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.10.2...v1.10.8)

Signed-off-by: dependabot[bot] <support@github.com>
4 years agoMerge branch '16101-logout'
Tom Clegg [Mon, 24 Feb 2020 20:35:59 +0000 (15:35 -0500)]
Merge branch '16101-logout'

fixes #16101

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16101: Redirect logout to Workbench if return_to param missing.
Tom Clegg [Thu, 20 Feb 2020 20:43:50 +0000 (15:43 -0500)]
16101: Redirect logout to Workbench if return_to param missing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '15781-multi-value-property-search'
Lucas Di Pentima [Wed, 19 Feb 2020 21:41:39 +0000 (18:41 -0300)]
Merge branch '15781-multi-value-property-search'

Refs #15781

4 years ago15781: Adds test proving that 'contains' does case-sensitive matching.
Lucas Di Pentima [Wed, 19 Feb 2020 18:06:25 +0000 (15:06 -0300)]
15781: Adds test proving that 'contains' does case-sensitive matching.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16157-adc-metrics'
Ward Vandewege [Tue, 18 Feb 2020 20:29:53 +0000 (15:29 -0500)]
Merge branch '16157-adc-metrics'

closes #16157

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoarvados-dispatch-cloud: metrics improvement
Ward Vandewege [Fri, 14 Feb 2020 19:54:23 +0000 (14:54 -0500)]
arvados-dispatch-cloud: metrics improvement

Expose instance_type in the instances_total Prometheus metric.

refs #16157

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoBump arvbox Go version, set wb2 version
Peter Amstutz [Tue, 18 Feb 2020 15:11:17 +0000 (10:11 -0500)]
Bump arvbox Go version, set wb2 version

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16101: Handle logout without sso-provider.
Tom Clegg [Mon, 17 Feb 2020 18:55:27 +0000 (13:55 -0500)]
16101: Handle logout without sso-provider.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16100-mime-types'
Tom Clegg [Mon, 17 Feb 2020 16:36:58 +0000 (11:36 -0500)]
Merge branch '16100-mime-types'

fixes #16100

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16100: Move test to integration suite to avoid logging errors.
Tom Clegg [Sat, 15 Feb 2020 21:47:34 +0000 (16:47 -0500)]
16100: Move test to integration suite to avoid logging errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoUpdate maintainer for our Docker build and test images.
Ward Vandewege [Fri, 14 Feb 2020 22:45:39 +0000 (17:45 -0500)]
Update maintainer for our Docker build and test images.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoMerge branch '12308-cgofuse'
Tom Clegg [Fri, 14 Feb 2020 20:13:15 +0000 (15:13 -0500)]
Merge branch '12308-cgofuse'

refs #12308

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16039-fuse-forward-slash-sub'
Tom Clegg [Fri, 14 Feb 2020 20:12:40 +0000 (15:12 -0500)]
Merge branch '16039-fuse-forward-slash-sub'

fixes #16039

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16080-github' refs #16080
Peter Amstutz [Fri, 14 Feb 2020 18:48:41 +0000 (13:48 -0500)]
Merge branch '16080-github' refs #16080

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago12308: Merge branch 'master'
Tom Clegg [Fri, 14 Feb 2020 18:42:48 +0000 (13:42 -0500)]
12308: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16100: Add package dependency for /etc/mime.types.
Tom Clegg [Fri, 14 Feb 2020 18:40:01 +0000 (13:40 -0500)]
16100: Add package dependency for /etc/mime.types.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16100: Log a warning if /etc/mime.types is missing.
Tom Clegg [Fri, 14 Feb 2020 18:39:38 +0000 (13:39 -0500)]
16100: Log a warning if /etc/mime.types is missing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16100: Test content-type detection.
Tom Clegg [Fri, 14 Feb 2020 18:25:30 +0000 (13:25 -0500)]
16100: Test content-type detection.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16080: Try more compact formatting
Peter Amstutz [Fri, 14 Feb 2020 15:36:44 +0000 (10:36 -0500)]
16080: Try more compact formatting

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: Align descriptive text with new website
Peter Amstutz [Fri, 14 Feb 2020 15:19:00 +0000 (10:19 -0500)]
16080: Align descriptive text with new website

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16152-keep-balance-http-crash' 2.0.0
Tom Clegg [Fri, 14 Feb 2020 00:22:45 +0000 (19:22 -0500)]
Merge branch '16152-keep-balance-http-crash'

fixes #16152

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16080: Fix commonwl.org link
Peter Amstutz [Thu, 13 Feb 2020 22:51:11 +0000 (17:51 -0500)]
16080: Fix commonwl.org link

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: README links code of conduct.
Peter Amstutz [Thu, 13 Feb 2020 22:49:39 +0000 (17:49 -0500)]
16080: README links code of conduct.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: Tweak readme some more
Peter Amstutz [Thu, 13 Feb 2020 22:44:11 +0000 (17:44 -0500)]
16080: Tweak readme some more

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: More tweaks on CONTRIBUTING and README
Peter Amstutz [Thu, 13 Feb 2020 22:32:04 +0000 (17:32 -0500)]
16080: More tweaks on CONTRIBUTING and README

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: Add dax
Peter Amstutz [Thu, 13 Feb 2020 22:10:21 +0000 (17:10 -0500)]
16080: Add dax

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16080: Writeup of CONTRIBUTING.md
Peter Amstutz [Thu, 13 Feb 2020 22:05:19 +0000 (17:05 -0500)]
16080: Writeup of CONTRIBUTING.md

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16152: Fix nil http handler and ignored config args.
Tom Clegg [Thu, 13 Feb 2020 20:58:09 +0000 (15:58 -0500)]
16152: Fix nil http handler and ignored config args.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16100: Fix bogus timing stats for empty responses.
Tom Clegg [Thu, 13 Feb 2020 07:29:22 +0000 (02:29 -0500)]
16100: Fix bogus timing stats for empty responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16039: Touch python clients so they run tests with the latest SDK.
Tom Clegg [Thu, 13 Feb 2020 02:50:07 +0000 (21:50 -0500)]
16039: Touch python clients so they run tests with the latest SDK.

Otherwise, "pip install" (during "install services/nodemanager", for
example) downgrades the SDK from the current version to the latest
version published on pip, and all test suites run with that version,
instead of the version we think we're testing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16039: Install missing python dep.
Tom Clegg [Thu, 13 Feb 2020 02:47:44 +0000 (21:47 -0500)]
16039: Install missing python dep.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16080: WIP adding code of conduct, improve community docs
Peter Amstutz [Wed, 12 Feb 2020 21:35:52 +0000 (16:35 -0500)]
16080: WIP adding code of conduct, improve community docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15781: Bump API revision number to signal new feature.
Lucas Di Pentima [Wed, 12 Feb 2020 18:59:11 +0000 (15:59 -0300)]
15781: Bump API revision number to signal new feature.

The feature would be the 'contains' filter operator. Workbench2 should
not try to use it on older Arvados clusters.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16039: Use current python sdk in py3 tests.
Tom Clegg [Wed, 12 Feb 2020 18:49:50 +0000 (13:49 -0500)]
16039: Use current python sdk in py3 tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Fix typo.
Tom Clegg [Wed, 12 Feb 2020 17:03:20 +0000 (12:03 -0500)]
12308: Fix typo.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Clarify chmod behavior.
Tom Clegg [Wed, 12 Feb 2020 17:02:39 +0000 (12:02 -0500)]
12308: Clarify chmod behavior.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Use RWMutex for filehandle map.
Tom Clegg [Wed, 12 Feb 2020 16:39:18 +0000 (11:39 -0500)]
12308: Use RWMutex for filehandle map.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16039: Fix & add test for sanitized/unsanitized name conflict.
Tom Clegg [Wed, 12 Feb 2020 15:48:05 +0000 (10:48 -0500)]
16039: Fix & add test for sanitized/unsanitized name conflict.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16039: Accommodate API servers with no config export.
Tom Clegg [Wed, 12 Feb 2020 15:37:48 +0000 (10:37 -0500)]
16039: Accommodate API servers with no config export.

Add more checks in test cases.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16144-nil-checks' refs #16144
Peter Amstutz [Wed, 12 Feb 2020 03:37:44 +0000 (22:37 -0500)]
Merge branch '16144-nil-checks' refs #16144

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16144: Adds more checks and simplifies nested conditionals.
Lucas Di Pentima [Tue, 11 Feb 2020 23:14:42 +0000 (20:14 -0300)]
16144: Adds more checks and simplifies nested conditionals.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16144: Fixes the bug.
Lucas Di Pentima [Tue, 11 Feb 2020 22:22:24 +0000 (19:22 -0300)]
16144: Fixes the bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16144: Adds tests exposing the bug.
Lucas Di Pentima [Tue, 11 Feb 2020 22:21:09 +0000 (19:21 -0300)]
16144: Adds tests exposing the bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16141-gosdk-missing-fields'
Lucas Di Pentima [Tue, 11 Feb 2020 17:57:54 +0000 (14:57 -0300)]
Merge branch '16141-gosdk-missing-fields'

Closes #16141

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Fixes User type, adjusts fixture to make the test pass.
Lucas Di Pentima [Tue, 11 Feb 2020 17:10:48 +0000 (14:10 -0300)]
16141: Fixes User type, adjusts fixture to make the test pass.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Updates the test to use a different, more complete collection fixture.
Lucas Di Pentima [Tue, 11 Feb 2020 16:41:41 +0000 (13:41 -0300)]
16141: Updates the test to use a different, more complete collection fixture.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Fixes GoSDK's Collection type.
Lucas Di Pentima [Tue, 11 Feb 2020 16:41:17 +0000 (13:41 -0300)]
16141: Fixes GoSDK's Collection type.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16039: Obey ForwardSlashNameSubstitution config in arv-mount.
Tom Clegg [Tue, 11 Feb 2020 15:58:28 +0000 (10:58 -0500)]
16039: Obey ForwardSlashNameSubstitution config in arv-mount.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago15718: Makes documentation clearer.
Lucas Di Pentima [Mon, 10 Feb 2020 22:29:35 +0000 (19:29 -0300)]
15718: Makes documentation clearer.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Fixes test to use the 1st keep_service's uuid the test server returns.
Lucas Di Pentima [Mon, 10 Feb 2020 19:22:07 +0000 (16:22 -0300)]
16141: Fixes test to use the 1st keep_service's uuid the test server returns.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Adds better message on test in failing situations.
Lucas Di Pentima [Mon, 10 Feb 2020 18:40:47 +0000 (15:40 -0300)]
16141: Adds better message on test in failing situations.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '15835-metrics-docs'
Tom Clegg [Mon, 10 Feb 2020 18:03:15 +0000 (13:03 -0500)]
Merge branch '15835-metrics-docs'

closes #15835

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoPin virtualenv<20
Peter Amstutz [Mon, 10 Feb 2020 17:54:49 +0000 (12:54 -0500)]
Pin virtualenv<20

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16141: Fixes GoSDK's User type.
Lucas Di Pentima [Mon, 10 Feb 2020 17:41:44 +0000 (14:41 -0300)]
16141: Fixes GoSDK's User type.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Expands test for other object types.
Lucas Di Pentima [Mon, 10 Feb 2020 17:41:10 +0000 (14:41 -0300)]
16141: Expands test for other object types.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoSet upper version of setuptools for Python 2 in Centos7 container
Peter Amstutz [Mon, 10 Feb 2020 16:11:26 +0000 (11:11 -0500)]
Set upper version of setuptools for Python 2 in Centos7 container

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoSet upper version of setuptools for Python 2 support
Peter Amstutz [Mon, 10 Feb 2020 16:09:36 +0000 (11:09 -0500)]
Set upper version of setuptools for Python 2 support

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16141: Fixes Collection type on Go SDK. Adjusts test.
Lucas Di Pentima [Mon, 10 Feb 2020 15:41:12 +0000 (12:41 -0300)]
16141: Fixes Collection type on Go SDK. Adjusts test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoMerge branch '16139-cwl-secondaryfiles-fix'
Peter Amstutz [Mon, 10 Feb 2020 15:14:05 +0000 (10:14 -0500)]
Merge branch '16139-cwl-secondaryfiles-fix'

fixes #16139

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoAnnotate notify uses localStorage instead of sessionStorage
Peter Amstutz [Mon, 10 Feb 2020 15:13:07 +0000 (10:13 -0500)]
Annotate notify uses localStorage instead of sessionStorage

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16139: Add test
Peter Amstutz [Sun, 9 Feb 2020 23:07:15 +0000 (18:07 -0500)]
16139: Add test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16141: Adds missing collection fields to GoSDK.
Lucas Di Pentima [Fri, 7 Feb 2020 23:40:51 +0000 (20:40 -0300)]
16141: Adds missing collection fields to GoSDK.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16141: Exposes the bug.
Lucas Di Pentima [Fri, 7 Feb 2020 23:40:17 +0000 (20:40 -0300)]
16141: Exposes the bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years ago16139: Fix secondaryFile errors when running --submit --no-wait
Peter Amstutz [Fri, 7 Feb 2020 20:59:10 +0000 (15:59 -0500)]
16139: Fix secondaryFile errors when running --submit --no-wait

When submitting, we want to preserve the original CWL version of the
document.

However, when it creates a RunnerContainer (a cwltool.Process) it
examines the input interface and expects it to be in the 1.1 data
model.  But if we preserve/reload the original document, it is still
in the 1.0 data model.  This causes

The code was deliberately overriding the CWL version in metadata to
make this work.  This results in the problem reported on this ticket.

The fix is to maintain both the updated and preserved documents, and
use them appropriately where they are expected.

refs #16139

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15835: Update metrics docs.
Tom Clegg [Fri, 7 Feb 2020 21:07:06 +0000 (16:07 -0500)]
15835: Update metrics docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoAdd note that some services require a minimal config.yml to start.
Peter Amstutz [Fri, 7 Feb 2020 16:36:53 +0000 (11:36 -0500)]
Add note that some services require a minimal config.yml to start.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoImprove readability of upgrade notes
Peter Amstutz [Thu, 6 Feb 2020 22:36:12 +0000 (17:36 -0500)]
Improve readability of upgrade notes

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16133-federation-loop'
Tom Clegg [Thu, 6 Feb 2020 19:59:07 +0000 (14:59 -0500)]
Merge branch '16133-federation-loop'

fixes #16133

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16133: Don't take multiple federation hops.
Tom Clegg [Thu, 6 Feb 2020 19:16:55 +0000 (14:16 -0500)]
16133: Don't take multiple federation hops.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16136-original-owner' closes #16136
Peter Amstutz [Thu, 6 Feb 2020 17:25:54 +0000 (12:25 -0500)]
Merge branch '16136-original-owner' closes #16136

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16136: Prioritize 'Function' over 'Value' and ignore null
Peter Amstutz [Thu, 6 Feb 2020 16:42:59 +0000 (11:42 -0500)]
16136: Prioritize 'Function' over 'Value' and ignore null

Because arvados-server config-dump will emit "Value: null" even if the
original config file didn't provide it.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago12308: Fix wrong error check.
Tom Clegg [Thu, 6 Feb 2020 16:14:37 +0000 (11:14 -0500)]
12308: Fix wrong error check.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16133: Don't take multiple hops when getting collections.
Tom Clegg [Thu, 6 Feb 2020 16:09:32 +0000 (11:09 -0500)]
16133: Don't take multiple hops when getting collections.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16133: Avoid cycle between old and new controllers.
Tom Clegg [Thu, 6 Feb 2020 15:45:48 +0000 (10:45 -0500)]
16133: Avoid cycle between old and new controllers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16133: Avoid cycle when searching federation for PDH.
Tom Clegg [Thu, 6 Feb 2020 15:19:04 +0000 (10:19 -0500)]
16133: Avoid cycle when searching federation for PDH.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoAdd a note to the install section
Peter Amstutz [Wed, 5 Feb 2020 18:33:02 +0000 (13:33 -0500)]
Add a note to the install section

Add note that you should look in the SDKs section for client tools.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago12308: Merge branch 'master'
Tom Clegg [Tue, 4 Feb 2020 14:47:55 +0000 (09:47 -0500)]
12308: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Check contents of test mount.
Tom Clegg [Tue, 4 Feb 2020 14:45:18 +0000 (09:45 -0500)]
12308: Check contents of test mount.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoMerge branch '16111-ssh-help' closes #16111
Peter Amstutz [Tue, 4 Feb 2020 14:43:36 +0000 (09:43 -0500)]
Merge branch '16111-ssh-help' closes #16111

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoMerge branch '16104-select-uuid'
Tom Clegg [Mon, 3 Feb 2020 22:04:16 +0000 (17:04 -0500)]
Merge branch '16104-select-uuid'

refs #16104

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago16111: Add SSHHelpPageHTML so admin can provide custom instructions
Peter Amstutz [Mon, 3 Feb 2020 21:02:36 +0000 (16:02 -0500)]
16111: Add SSHHelpPageHTML so admin can provide custom instructions

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16104: Don't impose federated query limitations on local-only query.
Tom Clegg [Mon, 3 Feb 2020 20:28:04 +0000 (15:28 -0500)]
16104: Don't impose federated query limitations on local-only query.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoIn our systemd service files, set a reasonable default for the open file
Ward Vandewege [Mon, 3 Feb 2020 19:39:20 +0000 (14:39 -0500)]
In our systemd service files, set a reasonable default for the open file
limit (65536).

refs #16089

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years agoMerge branch '16108-favorites' refs #16108
Peter Amstutz [Mon, 3 Feb 2020 19:35:42 +0000 (14:35 -0500)]
Merge branch '16108-favorites' refs #16108

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16108: Use zzzzz- in examples
Peter Amstutz [Mon, 3 Feb 2020 19:34:53 +0000 (14:34 -0500)]
16108: Use zzzzz- in examples

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago16108: Change wb1 'favorites' to filter on user_uuid instead of tail_uuid
Peter Amstutz [Sun, 2 Feb 2020 17:58:16 +0000 (12:58 -0500)]
16108: Change wb1 'favorites' to filter on user_uuid instead of tail_uuid

Fixes potential exploit by which a malicious user could inject
favorites into another user's favorites list.

Public favorites owned by "All Users" will now appear in wb1.

Move documentation about 'star' links from admin section to API
documentation.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate maintainer and vendor for our OS packages.
Ward Vandewege [Sun, 2 Feb 2020 15:55:17 +0000 (10:55 -0500)]
Update maintainer and vendor for our OS packages.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@jhvc.com>

4 years ago12308: Note xgo limitation.
Tom Clegg [Sat, 1 Feb 2020 07:07:19 +0000 (02:07 -0500)]
12308: Note xgo limitation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Add xgo to go.mod.
Tom Clegg [Sat, 1 Feb 2020 07:07:08 +0000 (02:07 -0500)]
12308: Add xgo to go.mod.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: cgofuse v1.2.0
Tom Clegg [Sat, 1 Feb 2020 07:00:55 +0000 (02:00 -0500)]
12308: cgofuse v1.2.0

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: Update xgo recipe.
Tom Clegg [Sat, 1 Feb 2020 06:44:25 +0000 (01:44 -0500)]
12308: Update xgo recipe.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years ago12308: go mod tidy
Tom Clegg [Fri, 31 Jan 2020 21:25:27 +0000 (16:25 -0500)]
12308: go mod tidy

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

4 years agoWorkbench 2 isn't really beta if we're telling people to use it.
Peter Amstutz [Thu, 30 Jan 2020 23:28:41 +0000 (18:28 -0500)]
Workbench 2 isn't really beta if we're telling people to use it.

refs #16015

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate more documentation for new config file, add 'group favorites'
Peter Amstutz [Thu, 30 Jan 2020 23:17:43 +0000 (18:17 -0500)]
Update more documentation for new config file, add 'group favorites'

refs #16015

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoWorkbench1 package depends on graphviz
Peter Amstutz [Thu, 30 Jan 2020 21:57:08 +0000 (16:57 -0500)]
Workbench1 package depends on graphviz

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoAdds information about the new vocabulary format on the release notes.
Lucas Di Pentima [Thu, 30 Jan 2020 19:52:17 +0000 (16:52 -0300)]
Adds information about the new vocabulary format on the release notes.

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>

4 years agoPin bundler to version compatible with all Rubies we support
Peter Amstutz [Thu, 30 Jan 2020 18:00:31 +0000 (13:00 -0500)]
Pin bundler to version compatible with all Rubies we support

refs #16015

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years agoUpdate text to refer to Arvados 2.0
Peter Amstutz [Thu, 30 Jan 2020 15:50:38 +0000 (10:50 -0500)]
Update text to refer to Arvados 2.0

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

4 years ago15781: Adds test confirming subprop '=' filter doesn't work on array elements.
Lucas Di Pentima [Thu, 30 Jan 2020 15:21:19 +0000 (12:21 -0300)]
15781: Adds test confirming subprop '=' filter doesn't work on array elements.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>