arvados.git
2 years agoMerge branch '2.4-staging' into 2.4-release refs #19330
Peter Amstutz [Mon, 8 Aug 2022 16:47:12 +0000 (12:47 -0400)]
Merge branch '2.4-staging' into 2.4-release refs #19330

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoFix 2.4.2 release date
Peter Amstutz [Mon, 8 Aug 2022 13:27:03 +0000 (09:27 -0400)]
Fix 2.4.2 release date

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoInclude shell in complete list of provision.sh roles 2.4.2
Peter Amstutz [Fri, 5 Aug 2022 19:40:08 +0000 (15:40 -0400)]
Include shell in complete list of provision.sh roles

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMissing shell role in single node install
Peter Amstutz [Fri, 5 Aug 2022 19:26:15 +0000 (15:26 -0400)]
Missing shell role in single node install

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoSync security update text. refs #19330
Peter Amstutz [Fri, 5 Aug 2022 18:03:31 +0000 (14:03 -0400)]
Sync security update text.  refs #19330

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoAdjust default version for provision.sh / arvbox
Peter Amstutz [Fri, 5 Aug 2022 17:51:24 +0000 (13:51 -0400)]
Adjust default version for provision.sh / arvbox

refs #19330

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoGrammar fixes
Peter Amstutz [Fri, 5 Aug 2022 17:29:43 +0000 (13:29 -0400)]
Grammar fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoAdd upgrading notes refs #19330
Peter Amstutz [Fri, 5 Aug 2022 17:13:32 +0000 (13:13 -0400)]
Add upgrading notes refs #19330

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch 'MajewskiKrzysztof/use_api_token_from_config_object'
Peter Amstutz [Fri, 22 Jul 2022 19:45:24 +0000 (15:45 -0400)]
Merge branch 'MajewskiKrzysztof/use_api_token_from_config_object'

refs #19282

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch 'keep_web_api_client_upload_method' refs #19220
Peter Amstutz [Thu, 7 Jul 2022 14:57:59 +0000 (10:57 -0400)]
Merge branch 'keep_web_api_client_upload_method' refs #19220

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19316-oj-safe-load'
Tom Clegg [Thu, 4 Aug 2022 17:33:47 +0000 (13:33 -0400)]
Merge branch '19316-oj-safe-load'

closes #19316

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19321-wb1-enum' refs #19321
Peter Amstutz [Thu, 4 Aug 2022 16:24:53 +0000 (12:24 -0400)]
Merge branch '19321-wb1-enum' refs #19321

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19280-cache-loadref' refs #19280
Peter Amstutz [Thu, 4 Aug 2022 15:59:15 +0000 (11:59 -0400)]
Merge branch '19280-cache-loadref' refs #19280

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19328-security-policy' refs #19328
Peter Amstutz [Wed, 3 Aug 2022 19:49:09 +0000 (15:49 -0400)]
Merge branch '19328-security-policy' refs #19328

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19291-tzinfo-upgrade'. Closes #19291
Lucas Di Pentima [Fri, 22 Jul 2022 15:21:57 +0000 (12:21 -0300)]
Merge branch '19291-tzinfo-upgrade'. Closes #19291

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '19296-remove-recursive'
Tom Clegg [Mon, 25 Jul 2022 17:30:11 +0000 (13:30 -0400)]
Merge branch '19296-remove-recursive'

fixes #19296

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19297-inexistent-field-filter-fix'. Closes #19297
Lucas Di Pentima [Thu, 28 Jul 2022 14:33:35 +0000 (11:33 -0300)]
Merge branch '19297-inexistent-field-filter-fix'. Closes #19297

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '19278-activerecord-update'. Closes #19278
Lucas Di Pentima [Tue, 19 Jul 2022 17:03:54 +0000 (14:03 -0300)]
Merge branch '19278-activerecord-update'. Closes #19278

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '19192-fix-deadlock'
Tom Clegg [Tue, 21 Jun 2022 19:31:44 +0000 (15:31 -0400)]
Merge branch '19192-fix-deadlock'

refs #19192

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoPin protobuf version to <4.0.0, refs #19202
Peter Amstutz [Mon, 20 Jun 2022 18:26:22 +0000 (14:26 -0400)]
Pin protobuf version to <4.0.0, refs #19202

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19193-rails-upgrade'. Closes #19193
Lucas Di Pentima [Tue, 14 Jun 2022 15:33:56 +0000 (12:33 -0300)]
Merge branch '19193-rails-upgrade'. Closes #19193

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '19177-sharing-links-ui-config'. Refs #19177
Lucas Di Pentima [Fri, 10 Jun 2022 14:57:35 +0000 (11:57 -0300)]
Merge branch '19177-sharing-links-ui-config'. Refs #19177

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago19283: Fixes webshell nginx upstream to point to the shell node.
Lucas Di Pentima [Wed, 20 Jul 2022 14:35:46 +0000 (11:35 -0300)]
19283: Fixes webshell nginx upstream to point to the shell node.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '18870-installer' refs #18870
Peter Amstutz [Thu, 30 Jun 2022 18:06:48 +0000 (14:06 -0400)]
Merge branch '18870-installer' refs #18870

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago19201: add a liquid comment that explains what to do when changing the
Ward Vandewege [Fri, 17 Jun 2022 17:02:21 +0000 (13:02 -0400)]
19201: add a liquid comment that explains what to do when changing the
       div with id "old-version-warning"

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19201: add warning when users are viewing documentation for old Arvados
Ward Vandewege [Fri, 17 Jun 2022 13:55:07 +0000 (09:55 -0400)]
19201: add warning when users are viewing documentation for old Arvados
       versions.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMore Salt installer doc refactoring.
Ward Vandewege [Thu, 2 Jun 2022 20:58:26 +0000 (16:58 -0400)]
More Salt installer doc refactoring.

refs #19175

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoFix a few typos in the help text.
Ward Vandewege [Thu, 2 Jun 2022 20:55:36 +0000 (16:55 -0400)]
Fix a few typos in the help text.

refs #19175

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoRefactor the multi-host salt install page.
Ward Vandewege [Thu, 2 Jun 2022 17:39:05 +0000 (13:39 -0400)]
Refactor the multi-host salt install page.

refs #19175

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoFix 2.4.1 release date refs #19017 2.4.1
Peter Amstutz [Thu, 2 Jun 2022 14:37:05 +0000 (10:37 -0400)]
Fix 2.4.1 release date refs #19017

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoDocumentation: fix typo.
Ward Vandewege [Wed, 1 Jun 2022 20:12:17 +0000 (16:12 -0400)]
Documentation: fix typo.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoAdd 2nd NVIDIA repo key
Peter Amstutz [Wed, 1 Jun 2022 19:34:04 +0000 (15:34 -0400)]
Add 2nd NVIDIA repo key

refs #19017

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoProvision script fix: clarify that the cluster id must be 5 lowercase
Ward Vandewege [Wed, 1 Jun 2022 16:17:16 +0000 (12:17 -0400)]
Provision script fix: clarify that the cluster id must be 5 lowercase
alphanumeric characters.

refs #19169

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoIn the config loader, we require the cluster id to be specified in
Ward Vandewege [Wed, 1 Jun 2022 16:11:49 +0000 (12:11 -0400)]
In the config loader, we require the cluster id to be specified in
lowercase. Clarify this in the error message when the cluster id is not
valid.

refs #19169

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoprovision script: fix single host/single hostname letsencrypt.
Ward Vandewege [Wed, 1 Jun 2022 14:15:23 +0000 (10:15 -0400)]
provision script: fix single host/single hostname letsencrypt.

refs #19169

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoDisable LocalKeepBlobBuffersPerVCPU on the single node installer
Ward Vandewege [Wed, 25 May 2022 15:04:56 +0000 (11:04 -0400)]
Disable LocalKeepBlobBuffersPerVCPU on the single node installer
development config, Keep uses /tmp here.

refs #18983

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoAdd 2.4.1 to upgrading, refs #19017
Peter Amstutz [Tue, 31 May 2022 19:59:35 +0000 (15:59 -0400)]
Add 2.4.1 to upgrading, refs #19017

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18983-warn-unused-local-keep'
Tom Clegg [Fri, 20 May 2022 14:31:40 +0000 (10:31 -0400)]
Merge branch '18983-warn-unused-local-keep'

fixes #18983

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '15370-install-docker'
Tom Clegg [Tue, 17 May 2022 18:56:08 +0000 (14:56 -0400)]
Merge branch '15370-install-docker'

refs #15370

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoUpdate default versions, refs #19017
Peter Amstutz [Fri, 27 May 2022 21:29:31 +0000 (17:29 -0400)]
Update default versions, refs #19017

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19144-wb-copy-collections-fix'. Closes #19144
Lucas Di Pentima [Fri, 27 May 2022 14:33:42 +0000 (11:33 -0300)]
Merge branch '19144-wb-copy-collections-fix'. Closes #19144

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoSalt installer change: standardize on putting the certs directory under
Ward Vandewege [Thu, 26 May 2022 20:42:02 +0000 (16:42 -0400)]
Salt installer change: standardize on putting the certs directory under
the local_config_dir directory, this simplifies things.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '15370-docker-tests'
Tom Clegg [Sat, 21 May 2022 01:27:12 +0000 (21:27 -0400)]
Merge branch '15370-docker-tests'

refs #15370

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoThe VERSION in provision.sh must include the package iteration.
Ward Vandewege [Thu, 26 May 2022 19:50:49 +0000 (15:50 -0400)]
The VERSION in provision.sh must include the package iteration.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoRemove illegal characters (currently just '/') from output collection names
Peter Amstutz [Wed, 25 May 2022 16:52:55 +0000 (12:52 -0400)]
Remove illegal characters (currently just '/') from output collection names

refs #19152

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19129-wb1-dashboard-speedup' refs #19129
Peter Amstutz [Fri, 20 May 2022 16:05:14 +0000 (12:05 -0400)]
Merge branch '19129-wb1-dashboard-speedup' refs #19129

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoFix integration test refs #17004
Peter Amstutz [Thu, 19 May 2022 20:13:57 +0000 (16:13 -0400)]
Fix integration test refs #17004

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19136-freeze-props-whitelist'
Tom Clegg [Thu, 19 May 2022 19:57:07 +0000 (15:57 -0400)]
Merge branch '19136-freeze-props-whitelist'

fixes #19136

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19099-singularity-container-shell'
Tom Clegg [Thu, 19 May 2022 15:26:59 +0000 (11:26 -0400)]
Merge branch '19099-singularity-container-shell'

closes #19099

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19141-nokogiri-update'. Closes #19141
Lucas Di Pentima [Thu, 19 May 2022 14:42:32 +0000 (11:42 -0300)]
Merge branch '19141-nokogiri-update'. Closes #19141

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17004-properties-on-output' refs #17004
Peter Amstutz [Thu, 19 May 2022 13:45:37 +0000 (09:45 -0400)]
Merge branch '17004-properties-on-output' refs #17004

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoDon't install docker in arvbox now that arvados-server install does it.
Peter Amstutz [Wed, 18 May 2022 15:44:34 +0000 (11:44 -0400)]
Don't install docker in arvbox now that arvados-server install does it.

refs #15370

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoarvbox option to override API_HOST to test with other clusters
Peter Amstutz [Tue, 17 May 2022 19:47:31 +0000 (15:47 -0400)]
arvbox option to override API_HOST to test with other clusters

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19070-cwl-test-fixing' refs #19070
Peter Amstutz [Tue, 17 May 2022 21:24:44 +0000 (17:24 -0400)]
Merge branch '19070-cwl-test-fixing' refs #19070

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19081-singularity-no-eval'
Tom Clegg [Tue, 17 May 2022 18:13:34 +0000 (14:13 -0400)]
Merge branch '19081-singularity-no-eval'

refs #19081

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19094-log-versions'
Tom Clegg [Tue, 17 May 2022 17:25:54 +0000 (13:25 -0400)]
Merge branch '19094-log-versions'

closes #19094

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoBash syntax in arvados-tests.sh requires bash, fixed.
Peter Amstutz [Mon, 16 May 2022 20:11:28 +0000 (16:11 -0400)]
Bash syntax in arvados-tests.sh requires bash, fixed.

refs #19109

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoFix set_secondary recursion error
Peter Amstutz [Mon, 16 May 2022 18:51:20 +0000 (14:51 -0400)]
Fix set_secondary recursion error

skip some problematic conformance tests in test_with_arvbox

refs #19109

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoFix arvados-tests.sh to use python from a-c-r package if available.
Peter Amstutz [Mon, 16 May 2022 17:20:29 +0000 (13:20 -0400)]
Fix arvados-tests.sh to use python from a-c-r package if available.

Add note about the purpose of arvados-tests.sh

refs #19070

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19126-nginx-proxy-settings-change'
Ward Vandewege [Fri, 13 May 2022 18:46:48 +0000 (14:46 -0400)]
Merge branch '19126-nginx-proxy-settings-change'

closes #19126

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '19109-upload-secondary' refs #19109
Peter Amstutz [Fri, 13 May 2022 15:08:31 +0000 (11:08 -0400)]
Merge branch '19109-upload-secondary' refs #19109

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19070-update-workflow-deps' refs #19070
Peter Amstutz [Fri, 13 May 2022 15:08:08 +0000 (11:08 -0400)]
Merge branch '19070-update-workflow-deps' refs #19070

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '19095-singularity-bugfix'
Tom Clegg [Tue, 10 May 2022 14:04:34 +0000 (10:04 -0400)]
Merge branch '19095-singularity-bugfix'

fixes #19095

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '19127-remove-warnings'
Ward Vandewege [Fri, 13 May 2022 14:13:29 +0000 (10:13 -0400)]
Merge branch '19127-remove-warnings'

closes #19127

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '19103-aca-list-default-limit'. Closes #19103
Lucas Di Pentima [Wed, 11 May 2022 14:02:50 +0000 (11:02 -0300)]
Merge branch '19103-aca-list-default-limit'. Closes #19103

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '18995-code-cleanup-5'
Ward Vandewege [Fri, 6 May 2022 12:47:39 +0000 (08:47 -0400)]
Merge branch '18995-code-cleanup-5'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '19015-rvm-gemset-passenger-fix'
Ward Vandewege [Fri, 6 May 2022 12:20:49 +0000 (08:20 -0400)]
Merge branch '19015-rvm-gemset-passenger-fix'

closes #19015

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '19077-arvbox-fixes' refs #19077
Peter Amstutz [Mon, 2 May 2022 21:32:13 +0000 (17:32 -0400)]
Merge branch '19077-arvbox-fixes' refs #19077

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18696-rnaseq-training' refs #18696
Peter Amstutz [Wed, 27 Apr 2022 13:50:44 +0000 (09:50 -0400)]
Merge branch '18696-rnaseq-training' refs #18696

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18835-uploadfiles-test' refs #18835
Peter Amstutz [Tue, 26 Apr 2022 13:28:43 +0000 (09:28 -0400)]
Merge branch '18835-uploadfiles-test' refs #18835

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '17301-cwl-oom' refs #17301
Peter Amstutz [Mon, 25 Apr 2022 20:06:06 +0000 (16:06 -0400)]
Merge branch '17301-cwl-oom' refs #17301

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18888-cwl-dir-arg' refs #18888
Peter Amstutz [Mon, 25 Apr 2022 13:52:48 +0000 (09:52 -0400)]
Merge branch '18888-cwl-dir-arg' refs #18888

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18894-manifest-size-doc' refs #18894
Peter Amstutz [Wed, 20 Apr 2022 14:43:27 +0000 (10:43 -0400)]
Merge branch '18894-manifest-size-doc' refs #18894

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18995-code-cleanup-2'
Ward Vandewege [Fri, 15 Apr 2022 22:10:36 +0000 (18:10 -0400)]
Merge branch '18995-code-cleanup-2'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18995-code-cleanup-4'
Ward Vandewege [Fri, 15 Apr 2022 20:22:24 +0000 (16:22 -0400)]
Merge branch '18995-code-cleanup-4'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18995-code-cleanup-3'
Ward Vandewege [Fri, 15 Apr 2022 18:23:34 +0000 (14:23 -0400)]
Merge branch '18995-code-cleanup-3'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18995-code-cleanup-1'
Ward Vandewege [Fri, 15 Apr 2022 15:45:59 +0000 (11:45 -0400)]
Merge branch '18995-code-cleanup-1'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18995-addrislocal'
Tom Clegg [Thu, 14 Apr 2022 19:41:16 +0000 (15:41 -0400)]
Merge branch '18995-addrislocal'

refs #18995

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '18976-c-d-l-dep'
Ward Vandewege [Wed, 13 Apr 2022 15:12:48 +0000 (11:12 -0400)]
Merge branch '18976-c-d-l-dep'

closes #18976

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoInstaller bugfix (part 2).
Ward Vandewege [Tue, 12 Apr 2022 20:10:10 +0000 (16:10 -0400)]
Installer bugfix (part 2).

refs #16375

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoInstaller bugfix.
Ward Vandewege [Tue, 12 Apr 2022 18:20:18 +0000 (14:20 -0400)]
Installer bugfix.

refs #16375

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMake compute node image script compatible with Ubuntu.
Ward Vandewege [Thu, 26 May 2022 16:34:20 +0000 (12:34 -0400)]
Make compute node image script compatible with Ubuntu.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19164: update doc accordingly.
Ward Vandewege [Thu, 26 May 2022 15:56:20 +0000 (11:56 -0400)]
19164: update doc accordingly.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19164: rework the help text for all the options of the compute image
Ward Vandewege [Thu, 26 May 2022 12:27:57 +0000 (08:27 -0400)]
19164: rework the help text for all the options of the compute image
       build script.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19164: add a few flags to the compute image builder script.
Ward Vandewege [Wed, 25 May 2022 19:11:39 +0000 (15:11 -0400)]
19164: add a few flags to the compute image builder script.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoProvision scripts: do not hardcode a ruby version when using RVM, use
Ward Vandewege [Wed, 25 May 2022 20:03:14 +0000 (16:03 -0400)]
Provision scripts: do not hardcode a ruby version when using RVM, use
the generic wrapper instead.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19075: When constructing a workflow request, set use_existing=false
Peter Amstutz [Wed, 27 Apr 2022 20:18:57 +0000 (16:18 -0400)]
19075: When constructing a workflow request, set use_existing=false

refs #19075

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoSalt installer multinode AWS example: modernize Arvados config a bit,
Ward Vandewege [Tue, 26 Apr 2022 12:52:53 +0000 (08:52 -0400)]
Salt installer multinode AWS example: modernize Arvados config a bit,
switch to using one S3 bucket for simplicity, make sure that the default
setting for CloudVMs/DriverParameters/IAMInstanceProfile matches
Volumes/DriverParameters/IAMRole.

refs #19054

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19054: more doc changes.
Ward Vandewege [Mon, 25 Apr 2022 20:32:52 +0000 (16:32 -0400)]
19054: more doc changes.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19054: doc update
Ward Vandewege [Mon, 25 Apr 2022 20:13:38 +0000 (16:13 -0400)]
19054: doc update

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18994-cwl-basename' refs #18994
Peter Amstutz [Tue, 19 Apr 2022 14:13:32 +0000 (10:13 -0400)]
Merge branch '18994-cwl-basename' refs #18994

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18992-hpc-local-keepstore'
Tom Clegg [Fri, 15 Apr 2022 19:28:21 +0000 (15:28 -0400)]
Merge branch '18992-hpc-local-keepstore'

closes #18992

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agodoc: update google analytics tag, remove old shim for IE6-9.
Ward Vandewege [Thu, 14 Apr 2022 19:01:17 +0000 (15:01 -0400)]
doc: update google analytics tag, remove old shim for IE6-9.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago19011: Bump nokogiri to 1.13.4
Ward Vandewege [Thu, 14 Apr 2022 14:43:22 +0000 (10:43 -0400)]
19011: Bump nokogiri to 1.13.4

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoFix package building, work around git issue caused by CVE-2022-24765.
Ward Vandewege [Wed, 13 Apr 2022 11:50:06 +0000 (07:50 -0400)]
Fix package building, work around git issue caused by CVE-2022-24765.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoFix doc for correct CUDARequirement fields
Peter Amstutz [Fri, 8 Apr 2022 19:29:50 +0000 (15:29 -0400)]
Fix doc for correct CUDARequirement fields

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoSync Arvados R SDK version with full release
Peter Amstutz [Fri, 8 Apr 2022 14:44:39 +0000 (10:44 -0400)]
Sync Arvados R SDK version with full release

refs #18701

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoFix the libarvados-perl package build. Fix the version number for that
Ward Vandewege [Fri, 8 Apr 2022 14:07:11 +0000 (10:07 -0400)]
Fix the libarvados-perl package build. Fix the version number for that
package.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoSet release date in admin/upgrading.html
Peter Amstutz [Thu, 7 Apr 2022 20:50:27 +0000 (16:50 -0400)]
Set release date in admin/upgrading.html

refs #18701

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18631-shell-login-sync'
Javier Bértoli [Wed, 6 Apr 2022 13:50:51 +0000 (10:50 -0300)]
Merge branch '18631-shell-login-sync'

closes #18631
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>