Peter Amstutz [Mon, 25 Sep 2017 20:10:39 +0000 (16:10 -0400)]
12278: Can provide custom schema salad to dev jobs build.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 25 Sep 2017 15:32:20 +0000 (11:32 -0400)]
12278: Propagate --debug flag to jobs.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 27 Sep 2017 21:57:16 +0000 (17:57 -0400)]
Update documentation to reflect that we are packaging Debian 9
('stretch').
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 27 Sep 2017 18:21:32 +0000 (14:21 -0400)]
12246: Make "possible causes" message easier to find and read. refs #12246
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 27 Sep 2017 17:01:36 +0000 (13:01 -0400)]
Merge branch '12246-command-not-found'
closes #12246
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 27 Sep 2017 15:26:22 +0000 (11:26 -0400)]
12246: Add debugging clues when command is not found in container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Sep 2017 14:05:14 +0000 (11:05 -0300)]
Merge branch '12195-nodemanager-quota-error'
Closes #12195
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 27 Sep 2017 13:39:36 +0000 (10:39 -0300)]
12195: Fixed warning message when the Retry-After header value cannot
be converted to integer.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 26 Sep 2017 20:29:42 +0000 (16:29 -0400)]
Suppress superfluous error message.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 26 Sep 2017 19:39:00 +0000 (15:39 -0400)]
12032: Fix compatibility with PostgreSQL 9.4.
9.4 doesn't have idle_in_transaction_session_timeout or row_security
configs, so couldn't execute structure.sql.
9.4 doesn't write "Dumped from/by version X", so 9.4 and 9.6 dev boxes
want an edit war.
refs #12032
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 26 Sep 2017 19:28:32 +0000 (15:28 -0400)]
Merge branch '12287-preserve-json-numbers' closes #12287
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 26 Sep 2017 17:56:04 +0000 (13:56 -0400)]
12287: Add number round-trip test.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 26 Sep 2017 02:43:10 +0000 (22:43 -0400)]
12287: Preserve JSON number types/formats in log file.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Tue, 26 Sep 2017 02:12:55 +0000 (22:12 -0400)]
Merge branch '12316-fix-provenance-graph'
closes #12316
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Mon, 25 Sep 2017 20:53:21 +0000 (16:53 -0400)]
Do not blow up the provenance graph if a PDH used in the workflow no
longer exists.
refs #12316
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Fri, 22 Sep 2017 21:00:07 +0000 (17:00 -0400)]
12276: Ensure dirent cache is disabled.
Setting this to zero fixed flakiness in #7751, so we might still rely
on it being zero for reliability.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 22 Sep 2017 18:43:26 +0000 (14:43 -0400)]
12276: Remove debug logging message.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Sep 2017 15:21:07 +0000 (11:21 -0400)]
12276: Reduce number of spurious invalidations sent to kernel.
* New policy to only send invalidations on objects that have a nonzero
kernel reference count.
* When clearing the contents of a CollectionDirectory, only invalidate the
topmost directory entry, this should take care of invalidating all paths
beneath it as well.
* Don't send invalidate_inode() when deleting an inode (by definition, the
inode is unreferenced by the kernel).
* Remove allow_dirent_cache for now (this only relates to caching negative
lookups, which we don't support).
* Set attribute attr_timeout based on the polling period of the underlying
object.
* FuncToJSONFile sets allow_attr_cache = False instead of allow_dirent_cache =
False (which is useless in this case).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 21:44:22 +0000 (17:44 -0400)]
12298: Allow non-null log when cancelling an unrunnable container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 22 Sep 2017 18:58:34 +0000 (14:58 -0400)]
12287: Preserve JSON number types/formats in container records.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 25 Sep 2017 19:39:50 +0000 (15:39 -0400)]
Merge branch '12032-project-trash' refs #12032
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Javier Bértoli [Mon, 25 Sep 2017 19:00:02 +0000 (16:00 -0300)]
Merge branch '12271-fpm-cleanup-on-rpm-upgrade' closes #12271
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@veritasgenetics.com>
Lucas Di Pentima [Mon, 25 Sep 2017 13:44:26 +0000 (10:44 -0300)]
12195: Log warning message when a retry-after header is not an integer.
Make sure min_retry_wait & max_retry_wait have sensible values.
Check that the effective retry wait is within bounds and doesn't get reset
when retry-after is zero, so it continues the exponential backoff plan.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 25 Sep 2017 13:19:50 +0000 (09:19 -0400)]
Merge branch '11068-cwl-missing-docker' closes #11068
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 23 Sep 2017 00:38:00 +0000 (20:38 -0400)]
Merge branch '12276-fuse-deadlock' refs #12276
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 22 Sep 2017 21:00:07 +0000 (17:00 -0400)]
12276: Ensure dirent cache is disabled.
Setting this to zero fixed flakiness in #7751, so we might still rely
on it being zero for reliability.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 22 Sep 2017 18:43:26 +0000 (14:43 -0400)]
12276: Remove debug logging message.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 22 Sep 2017 15:21:07 +0000 (11:21 -0400)]
12276: Reduce number of spurious invalidations sent to kernel.
* New policy to only send invalidations on objects that have a nonzero
kernel reference count.
* When clearing the contents of a CollectionDirectory, only invalidate the
topmost directory entry, this should take care of invalidating all paths
beneath it as well.
* Don't send invalidate_inode() when deleting an inode (by definition, the
inode is unreferenced by the kernel).
* Remove allow_dirent_cache for now (this only relates to caching negative
lookups, which we don't support).
* Set attribute attr_timeout based on the polling period of the underlying
object.
* FuncToJSONFile sets allow_attr_cache = False instead of allow_dirent_cache =
False (which is useless in this case).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 22 Sep 2017 13:27:01 +0000 (09:27 -0400)]
Merge branch '12298-cancel-fail'
refs #12298
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 21 Sep 2017 18:04:27 +0000 (14:04 -0400)]
11068: Catch OSError and give better error message when unable to execute Docker.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 21 Sep 2017 15:38:49 +0000 (11:38 -0400)]
Merge branch '12292-cwl-tmpdir-default' refs #12292
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 21:40:05 +0000 (17:40 -0400)]
Install upstream pip to work around Debian bug, no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 20 Sep 2017 20:05:18 +0000 (16:05 -0400)]
12292: Find crunchrunner vars even when mixed into a partial line
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 20 Sep 2017 19:24:34 +0000 (15:24 -0400)]
12292: Set defaults for tmpdir, outdir, keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Javier Bértoli [Wed, 20 Sep 2017 22:51:54 +0000 (19:51 -0300)]
Add parameter for FPM so it removes old directories on upgrade
refs #12271
Tom Clegg [Wed, 20 Sep 2017 21:44:22 +0000 (17:44 -0400)]
12298: Allow non-null log when cancelling an unrunnable container.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 20:03:53 +0000 (16:03 -0400)]
Fix dashboard crash on uncommitted container request.
refs #12246
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 20 Sep 2017 20:01:08 +0000 (17:01 -0300)]
12195: Catch the special case when a RateLimitReachedError exception is raised,
as it doesn't have a header attribute like its parent class.
Updated integration test to add a retry with this kind of error.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 15:33:31 +0000 (11:33 -0400)]
Merge branch '12247-no-failed-checksum'
closes #12247
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:57:31 +0000 (09:57 -0400)]
Merge branch '12107-faster-git'
closes #12107
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:54:47 +0000 (09:54 -0400)]
12107: Add protective comment.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 13:45:06 +0000 (09:45 -0400)]
Merge branch '12084-dispatch-stuck'
closes #12084
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 02:14:37 +0000 (22:14 -0400)]
12084: Fix dispatcher getting bogged down on "too many open files".
Previously, handling the "too many open files" error from popen3
consisted of sleeping 1 second and trying the next job in the
queue. When lots of jobs were queued, this meant getting stuck in
start_jobs() for a long time, futilely trying to start different jobs,
which all failed for the same reason.
Worse, being stuck here meant none of the working jobs could finish,
which meant no file descriptors could be freed.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 01:54:05 +0000 (21:54 -0400)]
12084: Remove dead code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 20 Sep 2017 01:51:38 +0000 (21:51 -0400)]
12084: Reap children whose threads exit abnormally (status == nil).
Ruby's thread status is false if the thread exited normally, nil if it
exited abnormally.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:02:47 +0000 (10:02 -0400)]
12107: Fix test suite dependence on outer git config.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:47:06 +0000 (10:47 -0400)]
12247: Simplify (Hash)Sum() usage.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 14:37:43 +0000 (10:37 -0400)]
12247: Propagate write errors, don't hide them with "bad checksum".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 13:56:29 +0000 (09:56 -0400)]
12107: Fix broken commit-exists-in-internal-repo check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 19 Sep 2017 13:52:02 +0000 (09:52 -0400)]
12107: Fix broken "git branch --contains" check.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 20:46:13 +0000 (16:46 -0400)]
12107: Test fetch-and-tag on unreferenced and non-tip commits.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 20:41:31 +0000 (16:41 -0400)]
12107: Use a fresh internal.git repo for each test run.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 19:13:36 +0000 (15:13 -0400)]
Bump PhantomJS version no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 15:42:01 +0000 (11:42 -0400)]
Arvbox explicitly initializes postgres with en_US.UTF-8 locale. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 19:09:08 +0000 (15:09 -0400)]
Fix quoting in test_with_arvbox no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:33:36 +0000 (14:33 -0400)]
Merge branch 'master' into 12107-faster-git
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:25:25 +0000 (14:25 -0400)]
Merge branch '12197-show-pdh-in-trash'
closes #12197
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:24:48 +0000 (14:24 -0400)]
Merge branch 'master' into 12197-show-pdh-in-trash
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 18:10:40 +0000 (14:10 -0400)]
12197: Update PDH column label for consistency.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 14:13:58 +0000 (10:13 -0400)]
Remove -f from 'docker tag' due to Docker update refs #12234
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 18 Sep 2017 03:03:29 +0000 (23:03 -0400)]
12197: Test PDH search and display on trash page.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 14 Sep 2017 15:31:05 +0000 (11:31 -0400)]
12197: Remove trash/delete labels on content rows.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 00:22:49 +0000 (20:22 -0400)]
Arvbox support for caching and offline install of npm packages. no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Sep 2017 19:06:17 +0000 (15:06 -0400)]
12032: Add permission_refresh_lock
This ensures that when refreshing the permission view in a transaction, any
other transactions affecting permissions will either be committed (so that
results are visible to the refresh) or blocked (waiting to perform its own
refresh).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 20:14:10 +0000 (16:14 -0400)]
12032: Don't need to refresh permission view in database seeds, should be done already.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:59:57 +0000 (15:59 -0400)]
12032: Remove user_uuid special case from all_perms.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:50:35 +0000 (15:50 -0400)]
12032: Remove unnecessary checks on user_uuids.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 19:43:56 +0000 (15:43 -0400)]
12032: Remove hopefully-unnecessary view refreshes between tests.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 17:17:46 +0000 (13:17 -0400)]
12032: Refresh materialized_permission_view immediately after migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 15:51:28 +0000 (11:51 -0400)]
12032: Remove startnode from materialized_permission_view (again), tests pass
without it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 13 Sep 2017 15:32:24 +0000 (11:32 -0400)]
12032: Update structure.sql from master schema + migration only.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 20:57:06 +0000 (16:57 -0400)]
12032: Container readable check uses subquery instead join to avoid returning
duplicate rows.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 18:18:32 +0000 (14:18 -0400)]
12032: Database reset used by integration tests refreshes permission view.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 11 Sep 2017 16:12:42 +0000 (12:12 -0400)]
12032: Fix down migration.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 18:29:47 +0000 (14:29 -0400)]
12032: Restore create_permission_view.sql with note that it is only
present for migration reasons.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 17:59:16 +0000 (13:59 -0400)]
12032: Update install guide to specify minimum Postgres version of 9.3
Include instructions for using SCL to get a newer Postgres on CentOS7.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 16:36:53 +0000 (12:36 -0400)]
12032: Add missing files.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 8 Sep 2017 16:33:28 +0000 (12:33 -0400)]
12032: Rename permission_view and remove Rails permission cache.
Always refresh permission view when permission graph changes.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 21:44:10 +0000 (17:44 -0400)]
12032: Controller & integration test teardown invalidates permission view.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 17:39:12 +0000 (13:39 -0400)]
12032: Add comments to migration. Also special case api_client_authorizations
in readable_by.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 14:59:42 +0000 (10:59 -0400)]
12032: Update structure.sql
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 03:41:34 +0000 (23:41 -0400)]
12032: Added migration for materialized view
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 7 Sep 2017 03:12:41 +0000 (23:12 -0400)]
12032: Ensure that permission_view is invalidated & refreshed
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 20:01:36 +0000 (16:01 -0400)]
12032: Fix owner_check to include user_uuids and target_owner_uuid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 18:54:50 +0000 (14:54 -0400)]
12032: Make queries to groups table a special case, streamlines permission logic.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 18:58:43 +0000 (14:58 -0400)]
12032: Add copyright notice
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 18:50:29 +0000 (14:50 -0400)]
12032: Bug fix so include_trash still respects permissions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 16:10:11 +0000 (12:10 -0400)]
12032: Test for ensure_unique_name when untrashing groups.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 31 Aug 2017 14:37:13 +0000 (10:37 -0400)]
12032: Refactor readable_by to minimize subqueries.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 30 Aug 2017 17:13:29 +0000 (13:13 -0400)]
12032: Log.readable_by uses permission_view
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 29 Aug 2017 13:08:19 +0000 (09:08 -0400)]
12032: Controller support for group trash.
Conttroller support and testing for contents, index, show, trash, untrash,
containers.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 28 Aug 2017 13:57:05 +0000 (09:57 -0400)]
12032: Adding controller tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 25 Aug 2017 18:23:30 +0000 (14:23 -0400)]
12032: Add test fixtures
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 25 Aug 2017 01:58:38 +0000 (21:58 -0400)]
12032: Fix hiding trashed groups directly owned by user.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 21:09:49 +0000 (17:09 -0400)]
12032: Tests for group delete behavior.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 20:22:12 +0000 (16:22 -0400)]
12032: Additional refactoring of readable_by. Refactor "trashable" into module.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 24 Aug 2017 16:03:09 +0000 (12:03 -0400)]
12032: Use permission_view in subquery to filter objects readable by user.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 6 Sep 2017 15:35:55 +0000 (11:35 -0400)]
12032: Benchmark for group permissions.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 14 Sep 2017 16:18:40 +0000 (12:18 -0400)]
Merge branch '12248-crunch2-reversemap' closes #12248
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Thu, 14 Sep 2017 15:20:15 +0000 (12:20 -0300)]
Merge branch '12236-libcloud-blob-storage-regression'
Refs #12236
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
projects / arvados.git / log