Lucas Di Pentima [Mon, 17 Aug 2020 19:48:31 +0000 (16:48 -0300)]
Merge branch '16470-api-rails-52'
Refs #16470
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Mon, 17 Aug 2020 18:51:04 +0000 (14:51 -0400)]
Add link from upgrade notes to general release notes.
no issue #
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Mon, 17 Aug 2020 17:38:06 +0000 (14:38 -0300)]
16470: Avoids crashing when running db:create in development mode.
The 'preload_all_models' initializer is now run even when db:create is
called, so it avoids the database to be created on arvbox, for example,
because it attempts to access the database before being created.
This initializer was added 7 years ago and it now seems to not be needed
anymore, so I think it's the cleaner way to resolve this issue.
See: https://github.com/rails/rails/issues/32870
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Mon, 17 Aug 2020 15:32:12 +0000 (11:32 -0400)]
Merge branch '16631-add-test'
closes #16631
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 17 Aug 2020 15:30:06 +0000 (11:30 -0400)]
16631: Merge branch 'master' into 16631-add-test
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Mon, 17 Aug 2020 15:00:08 +0000 (11:00 -0400)]
Merge branch '16663-running-ctrs-unknown-workers'
fixes #16663
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 17 Aug 2020 14:53:16 +0000 (10:53 -0400)]
16631: Remove some unneeded code.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Nico Cesar [Mon, 17 Aug 2020 14:47:48 +0000 (10:47 -0400)]
Merge branch '15889-delete-traffic_test.py' into master
closes #15889
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>
Nico Cesar [Mon, 17 Aug 2020 14:26:14 +0000 (10:26 -0400)]
deleted services/keep/tools/traffic_test.py
refs #15889
Arvados-DCO-1.1-Signed-off-by: Nico Cesar <nico@curii.com>
Tom Clegg [Mon, 17 Aug 2020 14:17:28 +0000 (10:17 -0400)]
16663: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Mon, 17 Aug 2020 14:16:47 +0000 (10:16 -0400)]
16663: Add comments in racy test.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Mon, 17 Aug 2020 02:27:59 +0000 (22:27 -0400)]
Fix more ineffassign warnings.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Sat, 15 Aug 2020 02:22:44 +0000 (22:22 -0400)]
Fix more ineffassign warnings.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Fri, 14 Aug 2020 19:54:16 +0000 (15:54 -0400)]
Merge branch '16683-fed-sharing' refs #16683
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 14 Aug 2020 16:07:56 +0000 (12:07 -0400)]
16683: Add test, remove useless check for PDH pattern
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Fri, 14 Aug 2020 13:57:53 +0000 (09:57 -0400)]
16683: Check that remote cluster id is presumed valid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Aug 2020 20:31:31 +0000 (16:31 -0400)]
16683: Revert behavior change, run gofmt
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Aug 2020 19:22:49 +0000 (15:22 -0400)]
16683: Accept PDH for head_uuid/tail_uuid
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 21:32:06 +0000 (17:32 -0400)]
16683: Permit granting permissions to remote users
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 20:20:19 +0000 (16:20 -0400)]
16683: Sharing dialog query is compatible with federated user list
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 12 Aug 2020 20:10:32 +0000 (16:10 -0400)]
16683: Set and check ForwardedFor on federated list requests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Thu, 13 Aug 2020 16:44:29 +0000 (12:44 -0400)]
16683: Add checks related to sharing and remote users
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Wed, 12 Aug 2020 14:19:07 +0000 (10:19 -0400)]
documentation: disable download buffering in our sample nginx config for
keep-web and keepproxy. This helps when the clients are far away/slow.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 10 Aug 2020 23:32:43 +0000 (19:32 -0400)]
Fix some ineffassign warnings.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 10 Aug 2020 23:11:00 +0000 (19:11 -0400)]
Fix typo.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Mon, 10 Aug 2020 20:10:48 +0000 (16:10 -0400)]
Merge branch '16353-1.2-release' refs #16353
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 10 Aug 2020 20:09:35 +0000 (16:09 -0400)]
16353: Add a section "Upgrading your workflow to CWL v1.2"
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 10 Aug 2020 17:17:57 +0000 (13:17 -0400)]
16353: Update cwltool for stable 1.2
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Lucas Di Pentima [Fri, 7 Aug 2020 22:11:27 +0000 (19:11 -0300)]
16470: Discards changes before locking instead of reloading the record.
There's no need to make a database roundtrip, because all the old attribute
values are available.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Fri, 7 Aug 2020 22:01:45 +0000 (18:01 -0400)]
16631: simplify test
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Fri, 7 Aug 2020 15:09:14 +0000 (12:09 -0300)]
16470: Removes active storage config file, ammends secrets.yml file.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 6 Aug 2020 12:22:28 +0000 (09:22 -0300)]
16470: Don't explicitly reload before locking on CR updates.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 5 Aug 2020 13:38:04 +0000 (10:38 -0300)]
16470: Fixes unrelated typo.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 3 Aug 2020 22:24:00 +0000 (19:24 -0300)]
16470: Fixes collection versioning management code.
Collection versioning management is implemented on an 'around_update' callback
so some 'attribute_changed()' & 'changes()' calls changed behaviour depending
on which side of the 'yield' were made.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 31 Jul 2020 19:43:40 +0000 (16:43 -0300)]
16470: Avoids crashing when running the rake task db:create.
There was a behaviour change on rake tasks that avoided the creation of the
test database. All initializers are now called from rake tasks, so those
initializers with code accessing the database will fail when the database
isn't created.
See: https://github.com/rails/rails/issues/32870
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 31 Jul 2020 17:38:20 +0000 (14:38 -0300)]
16470: File updates & additions from 'rake rails:update'
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 20:51:16 +0000 (17:51 -0300)]
16470: Fixes deprecation warning.
Explained at: https://github.com/rails/rails/pull/29619#issuecomment-
392583498
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 20:40:09 +0000 (17:40 -0300)]
16470: Removes exception deprecated on rails 3.2
Its substitute is already being used.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 19:54:22 +0000 (16:54 -0300)]
16470: Upgrades rails to 5.2
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 19:16:29 +0000 (16:16 -0300)]
16470: Fixes false unpersisted status when retrieving a record with audit logs.
The cleanest solution I came up with is to flag the instance when it's
retrieved from the database, and reset any changes after stashing its
state on the log_start_state callback.
Haven't found a way to read the serialized attributes without making
them appear as changed, and I think it isn't possible because the
attributes have to be unserialized before the read operation, and thus
the dirty state machinery would assume the attribute may be modified.
This solution isn't ideal, but I think it's acceptable as it doesn't
make additional database requests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 28 Jul 2020 16:55:50 +0000 (13:55 -0300)]
16470: Adds ArvadosModel test exposing a bug with audit logs.
When audit logs are enabled, fetching objects from models with serialized
attributes (for example: User or ContainerRequest) return an unpersisted
instance even if reload() is called on it.
This is a problem because from Rails 5.2, lock!() and with_lock() will raise
an exception when called on unpersisted instances.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Fri, 24 Jul 2020 14:47:16 +0000 (11:47 -0300)]
16470: Fixes test on user model.
Rails 5.1 deprecated the attr_changed? in favor of more explicit methods
because there was ambiguity when called from an 'after' or 'before' callback.
The test UsersTest#test_cannot_set_is_active_to_false_directly started failing
because User.setup is called from both types of callbacks, so its internal
checks weren't passing in some cases.
Also, avoids doing unnecessary queries to get the 'All users' group.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Thu, 23 Jul 2020 20:54:32 +0000 (17:54 -0300)]
16470: Changes the way of setting the callback that sets the DB timezone.
This avoids intermittent freezes when running tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Ward Vandewege [Thu, 6 Aug 2020 21:16:53 +0000 (17:16 -0400)]
16631: add test
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Tue, 21 Jul 2020 14:18:24 +0000 (11:18 -0300)]
16470: Removes cleanup code on test. All threads share a db connection.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 21 Jul 2020 13:22:41 +0000 (10:22 -0300)]
16470: Removes unnecessary gem that may also cause issues.
The gem doesn't seem to be used anywhere and may not be needed
anymore.
See: https://github.com/rails/rails/issues/28197#issuecomment-
291120834
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:40:38 +0000 (11:40 -0300)]
16470: Fixes reload() API to match the overridden function.
reload()'s documentation states: "...in addition to the in-place modification
the method returns self for convenience."
https://api.rubyonrails.org/v5.1.7/classes/ActiveRecord/Persistence.html#method-i-reload
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:36:06 +0000 (11:36 -0300)]
16470: Avoids DB connection closing when running tests on missing places.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 20 Jul 2020 14:35:00 +0000 (11:35 -0300)]
16470: Fixes internal API usage.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 15 Jul 2020 14:14:09 +0000 (11:14 -0300)]
16470: Fixes tests. Avoids closing a DB connection when using threads on tests.
From Rails 5.1, test threads share a database connection, so UpdatePriority
won't try to close DB connections when running from tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 6 Jul 2020 22:07:29 +0000 (19:07 -0300)]
16470: Fixes deprecation warnings on unit tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Mon, 6 Jul 2020 19:44:19 +0000 (16:44 -0300)]
16470: Updates Rails API to 5.1.7
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Wed, 1 Jul 2020 21:42:41 +0000 (18:42 -0300)]
16470: Bumps dependency on activesupport for rails upgrade.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Tom Clegg [Tue, 4 Aug 2020 21:19:45 +0000 (17:19 -0400)]
16663: Test for errant cancel while VMs have state==unknown.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Tue, 4 Aug 2020 20:06:29 +0000 (16:06 -0400)]
16663: Don't kill orphaned containers when unprobed nodes exist.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Tue, 4 Aug 2020 19:45:51 +0000 (15:45 -0400)]
Merge branch '10477-upgrade-aws-s3-driver'
closes #10477
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 4 Aug 2020 19:45:07 +0000 (15:45 -0400)]
Merge branch 'master' into 10477-upgrade-aws-s3-driver
refs #10477
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
medcelerate [Mon, 27 Jul 2020 17:00:30 +0000 (13:00 -0400)]
16625: Added fix to prevent ruby from failing when @ appears in the user for the database config.
Added escaping to password and dbname.
refs #16625
Arvados-DCO-1.1-Signed-off-by: Evan Clark <evan.clark.professional@gmail.com>
Ward Vandewege [Mon, 3 Aug 2020 20:04:31 +0000 (16:04 -0400)]
boot outcomes metric: fix labels and add some checks for the new metric
in the tests.
refs #16636
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 3 Aug 2020 18:49:23 +0000 (14:49 -0400)]
Merge branch '16636-boot-outcome-metrics'
refs #16636
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 3 Aug 2020 18:37:22 +0000 (14:37 -0400)]
16636: implement review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Mon, 3 Aug 2020 15:14:29 +0000 (11:14 -0400)]
10477: Fix timezone handling in s3aws tests, to avoid issues when the tests are
run in non-UTC environments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 15:58:16 +0000 (11:58 -0400)]
10477: implement review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 24 Jul 2020 17:55:51 +0000 (13:55 -0400)]
10477: disable sha-256 calculation by the S3 driver; we don't need it
and it slows uploads down because it's CPU bound.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 22 Jul 2020 11:10:14 +0000 (07:10 -0400)]
10477: first version of the aws-sdk-go-v2 driver.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 31 Jul 2020 21:37:12 +0000 (17:37 -0400)]
16636: add boot outcome metrics.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 31 Jul 2020 21:28:04 +0000 (17:28 -0400)]
gofmt fix.
refs #16616
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 31 Jul 2020 20:06:18 +0000 (16:06 -0400)]
documentation: fix more broken links.
refs #16616
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 31 Jul 2020 19:05:22 +0000 (15:05 -0400)]
documentation: fix broken links; also arvados-dispatch-cloud is not
experimental anymore.
refs #16616
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 21:36:30 +0000 (17:36 -0400)]
documentation: mention API/MaxKeepBlobBuffers on the Keepstore
installation page.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 15:10:15 +0000 (11:10 -0400)]
Merge branch '16616-publish-packer-compute-images'
refs #16616
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 15:09:24 +0000 (11:09 -0400)]
16616: make sure that docker uses the large partition on the compute
nodes.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 29 Jul 2020 13:58:25 +0000 (09:58 -0400)]
16616: incorporate review comments.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 28 Jul 2020 17:37:46 +0000 (13:37 -0400)]
16616: move the compute-image packer templates into the arvados
repository. Update documentation.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 24 Jul 2020 21:13:49 +0000 (17:13 -0400)]
documentation: arvados-dispatch-cloud: add missing curl command.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Tom Clegg [Fri, 24 Jul 2020 19:57:58 +0000 (15:57 -0400)]
Merge branch '16631-no-run-on-drain'
refs #16631
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Tom Clegg [Fri, 24 Jul 2020 19:47:31 +0000 (15:47 -0400)]
16631: Don't start new containers on nodes in hold/drain state.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
Ward Vandewege [Thu, 23 Jul 2020 13:13:53 +0000 (09:13 -0400)]
The arvados-docker-cleaner packages on Debian 10 and Ubuntu
18.04 (and later, presumably) have a dependency on the python3-distutils
package.
closes #16611
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Wed, 22 Jul 2020 20:28:57 +0000 (16:28 -0400)]
16623: Add NetworkResourceGroup to install-dispatch-cloud
refs #16623
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Wed, 22 Jul 2020 18:58:59 +0000 (14:58 -0400)]
16623: Add NetworkResourceGroup option for Azure
refs #16623
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Wed, 22 Jul 2020 20:09:53 +0000 (16:09 -0400)]
Merge branch '16585-keep-exercise-improvements'
closes #16585
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Wed, 22 Jul 2020 20:09:19 +0000 (16:09 -0400)]
Merge branch 'master' into 16585-keep-exercise-improvements
refs #16585
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Tue, 21 Jul 2020 21:10:40 +0000 (17:10 -0400)]
16585: implement review feedback.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 21:02:11 +0000 (17:02 -0400)]
Merge branch '16584-with-schemas' refs #16584
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 21:01:57 +0000 (17:01 -0400)]
Merge branch '16377-missing-default' refs #16377
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 21 Jul 2020 20:59:14 +0000 (16:59 -0400)]
Merge branch '16353-cwl-1.2' refs #16353
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Mon, 20 Jul 2020 23:21:14 +0000 (19:21 -0400)]
16585: fix memory leak when -repeat is specified and -rthreads is not
zero. Always skip warmup phase when -rthreads is zero.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Peter Amstutz [Mon, 20 Jul 2020 22:11:18 +0000 (18:11 -0400)]
16353: Handle a few mount point edge cases.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 20 Jul 2020 19:59:29 +0000 (15:59 -0400)]
16353: Support CWL 1.2 behavior for mounting at arbitrary container path
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:34:33 +0000 (09:34 -0400)]
Merge branch 'golharam-use_mktemp'
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:33:19 +0000 (09:33 -0400)]
Merge branch 'use_mktemp' of https://github.com/golharam/arvados into golharam-use_mktemp
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:28:56 +0000 (09:28 -0400)]
Merge branch 'mr-c-patch-1'
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Ward Vandewege [Fri, 17 Jul 2020 13:14:59 +0000 (09:14 -0400)]
Merge branch 'patch-1' of https://github.com/mr-c/arvados into mr-c-patch-1
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>
Lucas Di Pentima [Tue, 14 Jul 2020 21:42:56 +0000 (18:42 -0300)]
Merge branch '16589-arv-fed-migrate-fixes'
Closes #16589
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Lucas Di Pentima [Tue, 14 Jul 2020 21:33:17 +0000 (18:33 -0300)]
16589: Changes error message wording.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas@di-pentima.com.ar>
Peter Amstutz [Thu, 25 Jun 2020 21:36:19 +0000 (17:36 -0400)]
16377: Fix CollectionFsAccess.exists to catch IOError & return False
Add test to reproduce
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 14 Jul 2020 17:19:14 +0000 (13:19 -0400)]
16584: Fix http tests for change in naming
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Jul 2020 21:39:50 +0000 (17:39 -0400)]
16584: Add --skip-schemas (passthrough to cwltool)
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Mon, 13 Jul 2020 21:36:45 +0000 (17:36 -0400)]
16584: collection name quote slashes in http_to_keep
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Peter Amstutz [Tue, 14 Jul 2020 17:19:14 +0000 (13:19 -0400)]
16584: Don't consume exception in set_crunch_output
Fix a couple of incorrect tests that were hidden by this.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
projects / arvados.git / log