Peter Amstutz [Mon, 3 Apr 2017 20:21:28 +0000 (16:21 -0400)]
Merge branch '11407-go-sdk-debug' closes #11407
Peter Amstutz [Mon, 3 Apr 2017 19:26:50 +0000 (15:26 -0400)]
11407: keepclient checks for ARVADOS_DEBUG and enables debugging.
Lucas Di Pentima [Mon, 3 Apr 2017 18:07:48 +0000 (15:07 -0300)]
7824: Log errors when trying to read the collection specified.
Lucas Di Pentima [Mon, 3 Apr 2017 17:52:36 +0000 (14:52 -0300)]
7824: Closing file when finished writing
Peter Amstutz [Mon, 3 Apr 2017 13:52:13 +0000 (09:52 -0400)]
8567: Add workaround for "trap EXIT" in pid 1 bash process. Add comments.
Tom Clegg [Sat, 1 Apr 2017 02:07:19 +0000 (22:07 -0400)]
11100: Adjust delete_at in before_validation hook instead of validation. Permit changing trash_at without extending delete_at.
Tom Clegg [Fri, 31 Mar 2017 21:26:43 +0000 (17:26 -0400)]
11100: Specify units in output_ttl docs.
Tom Clegg [Fri, 31 Mar 2017 20:17:19 +0000 (16:17 -0400)]
11402: Disable caching if $HOME/ is not writable, instead of returning a broken cache.
closes #11402
radhika [Fri, 31 Mar 2017 18:04:02 +0000 (14:04 -0400)]
closes #11368
Merge branch '11368-collection-file-rename-warning'
radhika [Fri, 31 Mar 2017 15:39:13 +0000 (11:39 -0400)]
11368: show error if user tries to rename a collection file with a duplicate name.
Tom Clegg [Fri, 31 Mar 2017 17:54:51 +0000 (13:54 -0400)]
Merge branch '11398-nodes-items-available'
refs #11398
Tom Clegg [Fri, 31 Mar 2017 17:52:36 +0000 (13:52 -0400)]
11398: Fix missing items_available in nodes#index response.
Lucas Di Pentima [Fri, 31 Mar 2017 16:40:23 +0000 (13:40 -0300)]
7824: Use logging facility to show error messages.
Peter Amstutz [Fri, 31 Mar 2017 14:41:55 +0000 (10:41 -0400)]
Merge branch '9132-dockerclient' closes #9132
Lucas Di Pentima [Fri, 31 Mar 2017 14:24:50 +0000 (11:24 -0300)]
7824: Updated code to use newer Collection APIs, leaving all_streams() and all_files() behind.
Peter Amstutz [Fri, 31 Mar 2017 14:17:23 +0000 (10:17 -0400)]
9132: Fix test errors due to rebase.
Ward Vandewege [Fri, 31 Mar 2017 13:57:56 +0000 (09:57 -0400)]
Fix package test for ubuntu1204.
refs #10797
Tom Clegg [Thu, 30 Mar 2017 22:47:12 +0000 (18:47 -0400)]
11100: If caller sets collection.delete_at too early, set it to the earliest allowed time instead of failing.
Peter Amstutz [Thu, 30 Mar 2017 22:02:11 +0000 (18:02 -0400)]
9132: Fix ContainerCreate to include HostConfig, container UUID as name.
Tom Clegg [Thu, 30 Mar 2017 21:11:05 +0000 (17:11 -0400)]
11100: Add comment about delete_at validation race.
Tom Clegg [Thu, 30 Mar 2017 20:56:59 +0000 (16:56 -0400)]
11100: Clean up permission checks.
Tom Clegg [Thu, 30 Mar 2017 16:34:12 +0000 (12:34 -0400)]
11100: Add container_requests.output_ttl field. Fix validation of output/log changes on finalized CRs.
Peter Amstutz [Thu, 30 Mar 2017 19:40:28 +0000 (19:40 +0000)]
8567: Log total bytes to migrate
Peter Amstutz [Thu, 30 Mar 2017 19:14:37 +0000 (19:14 +0000)]
8567: Use arvados.config instead of os.environ. Tweak disk space accounting output.
Lucas Di Pentima [Thu, 30 Mar 2017 18:40:41 +0000 (15:40 -0300)]
7824: Moved arv-get code to arvados.commands and replaced bin/arv-get with a stub caller.
Peter Amstutz [Thu, 30 Mar 2017 18:19:42 +0000 (14:19 -0400)]
9132: Fix after rebase
radhika [Wed, 22 Mar 2017 20:47:44 +0000 (16:47 -0400)]
9132: Use ThinDockerClientProxy to overcome the import issue around "github.com/docker/docker/vendor/golang.org/x/net/context".
Perform most of the test updates needed to use the new API.
Peter Amstutz [Thu, 30 Mar 2017 18:09:28 +0000 (14:09 -0400)]
9132: few more updates to use the new API
Peter Amstutz [Thu, 30 Mar 2017 18:07:01 +0000 (14:07 -0400)]
9132: WIP switching to using official Docker Go client.
Peter Amstutz [Thu, 30 Mar 2017 18:32:06 +0000 (14:32 -0400)]
Merge branch '11332-fix-crunchscript' refs #11332
Lucas Di Pentima [Thu, 30 Mar 2017 18:15:20 +0000 (15:15 -0300)]
7824: Further ordering fixes. Now all arv-ls tests passes.
Tom Clegg [Thu, 30 Mar 2017 17:41:22 +0000 (13:41 -0400)]
Merge branch '7709-api-rails4' (partial)
refs #7709
refs #11100
Peter Amstutz [Thu, 30 Mar 2017 14:07:52 +0000 (10:07 -0400)]
8567: Improve disk space accounting. Default to use overlay storage driver (but user can override).
Lucas Di Pentima [Thu, 30 Mar 2017 15:06:46 +0000 (12:06 -0300)]
7824: Fix upper/lower case ordering on arv-ls.
Tom Clegg [Tue, 21 Mar 2017 15:59:40 +0000 (11:59 -0400)]
7709: De-duplicate "ensure unique name" implementations.
Tom Clegg [Tue, 21 Mar 2017 16:49:06 +0000 (12:49 -0400)]
7709: Do not set job_readable when it won't be used.
Tom Clegg [Tue, 21 Mar 2017 15:56:17 +0000 (11:56 -0400)]
7709: Leave container_request alone when applying default keep_cache_ram value.
Tom Clegg [Tue, 21 Mar 2017 16:01:33 +0000 (12:01 -0400)]
7709: Fix tests (count existing links before adding new ones).
Tom Clegg [Thu, 30 Mar 2017 14:29:47 +0000 (10:29 -0400)]
11209: Restore missing import.
refs #11209
Peter Amstutz [Thu, 30 Mar 2017 14:09:33 +0000 (10:09 -0400)]
11332-fix-crunchscript: Set ACCEPTLIST_RE because crunch_script alternate entry
point doesn't go through main.
Tom Clegg [Thu, 30 Mar 2017 01:23:24 +0000 (21:23 -0400)]
11355: Arvados gems accept json 2.x.
refs #11355
Peter Amstutz [Wed, 29 Mar 2017 15:51:45 +0000 (11:51 -0400)]
10401: Bump cwltool for packing fix.
Peter Amstutz [Wed, 29 Mar 2017 16:00:07 +0000 (12:00 -0400)]
10401: Bump schema salad for self-colliding id fix.
Peter Amstutz [Tue, 28 Mar 2017 13:57:12 +0000 (09:57 -0400)]
10401: Update crunch script, no longer expands directories by default.
Peter Amstutz [Mon, 27 Mar 2017 20:27:32 +0000 (16:27 -0400)]
10401: Fixup file/directory literal handling
Peter Amstutz [Mon, 27 Mar 2017 20:18:34 +0000 (16:18 -0400)]
10401: Only upload file:// identifiers.
Peter Amstutz [Mon, 27 Mar 2017 20:04:55 +0000 (16:04 -0400)]
10401: Bump arvados-python-client version for updates to
arvados.command.run.uploadfiles.
Peter Amstutz [Wed, 29 Mar 2017 15:59:35 +0000 (11:59 -0400)]
10401: Use custom_schema_callback. Bump schema-salad and cwltool versions.
Peter Amstutz [Fri, 24 Mar 2017 18:55:02 +0000 (14:55 -0400)]
10401: Rework support for uploading Directories (don't assume files are
enumerated).
Peter Amstutz [Wed, 8 Mar 2017 18:23:38 +0000 (13:23 -0500)]
10401: Allow Arvados extensions to be used in "requirements" not just "hints".
Peter Amstutz [Tue, 28 Mar 2017 17:57:06 +0000 (13:57 -0400)]
10401: Use use_custom_schema feature for extensions.
Tom Clegg [Wed, 29 Mar 2017 15:51:55 +0000 (11:51 -0400)]
Merge branch '11235-log-retryable'
refs #11235
Tom Clegg [Wed, 29 Mar 2017 15:49:49 +0000 (11:49 -0400)]
11235: Log a message when a job is interrupted by node failure.
...and say what's going to happen as a result, even if that is not
"giving up" yet.
radhika [Wed, 29 Mar 2017 15:44:42 +0000 (11:44 -0400)]
closes #3821
Merge branch '3821-collection-file-manage'
Peter Amstutz [Wed, 29 Mar 2017 15:43:20 +0000 (11:43 -0400)]
Fix invalid records in API collections test fixture and improve error message
to include both values. Incidentally revealed by adding PDH index to
collections table. refs #11361
radhika [Wed, 29 Mar 2017 15:28:28 +0000 (11:28 -0400)]
3821: improve the tooltip on rename file option.
Peter Amstutz [Wed, 29 Mar 2017 14:54:20 +0000 (10:54 -0400)]
Fix packaging for python-arvados-cwl-runner refs #11333
Tom Clegg [Wed, 29 Mar 2017 04:26:24 +0000 (00:26 -0400)]
Merge branch '11361-pdh-index'
refs #11361
Tom Clegg [Tue, 28 Mar 2017 22:01:25 +0000 (18:01 -0400)]
11361: Add pdh index to collections table.
Tom Clegg [Tue, 28 Mar 2017 20:13:18 +0000 (16:13 -0400)]
Merge branch '11209-unmount-replace'
refs #11209
Peter Amstutz [Tue, 28 Mar 2017 20:01:50 +0000 (16:01 -0400)]
Merge branch '11333-cwl-phone-home' closes #11333
radhika [Tue, 28 Mar 2017 20:01:06 +0000 (16:01 -0400)]
3821: update test assertion that randomly fails; in fact, I don't see how it ever worked with that syntax.
Peter Amstutz [Tue, 28 Mar 2017 16:57:25 +0000 (12:57 -0400)]
11333: Add explicit version pin on 'typing'
Peter Amstutz [Tue, 28 Mar 2017 16:44:20 +0000 (12:44 -0400)]
11332: Suppress phone-home behavior in check_exists by recognizing
http://arvados.org/cwl and returning True.
Peter Amstutz [Tue, 28 Mar 2017 19:50:02 +0000 (15:50 -0400)]
Merge branch '11332-cwl-filenames' closes #11332
radhika [Tue, 28 Mar 2017 19:26:39 +0000 (15:26 -0400)]
Merge branch 'master' into 3821-collection-file-manage
radhika [Tue, 28 Mar 2017 18:07:42 +0000 (14:07 -0400)]
3821: collection viewed from another object
radhika [Tue, 28 Mar 2017 16:54:56 +0000 (12:54 -0400)]
3821: The "Remove selected files" option should only be presented if the user can update the collection.
Peter Amstutz [Mon, 27 Mar 2017 21:29:58 +0000 (17:29 -0400)]
11332: Override relaxed path checks to be even more relaxed, and bump cwltool &
schema salad pin for hashes-in-filenames fix.
radhika [Tue, 28 Mar 2017 15:33:19 +0000 (11:33 -0400)]
3821: attr_accessor not needed on collection "filename"
radhika [Tue, 28 Mar 2017 15:25:35 +0000 (11:25 -0400)]
3821: add an integration test to rename a file in a collection
Tom Clegg [Tue, 28 Mar 2017 05:52:56 +0000 (01:52 -0400)]
11209: Test using ./bin/arv-mount from source dir.
radhika [Mon, 27 Mar 2017 23:37:45 +0000 (19:37 -0400)]
3821: integration test to remove files from a collection
Tom Clegg [Mon, 27 Mar 2017 22:43:56 +0000 (18:43 -0400)]
11209: Replace "--unmount /path/..." with "--unmount-all /path".
Tom Clegg [Mon, 27 Mar 2017 22:36:48 +0000 (18:36 -0400)]
11209: Fix daemon mode.
DaemonContext cannot happen after listen_for_events().
radhika [Mon, 27 Mar 2017 22:35:56 +0000 (18:35 -0400)]
3821: collection controller tests for remove and rename files.
Peter Amstutz [Mon, 27 Mar 2017 20:22:46 +0000 (16:22 -0400)]
Update cwl test_submit refs #10401
Peter Amstutz [Mon, 27 Mar 2017 19:54:41 +0000 (15:54 -0400)]
Merge branch '10401-run-upload-dir' refs #10401
Peter Amstutz [Fri, 24 Mar 2017 18:55:02 +0000 (14:55 -0400)]
10401: Support in arv-run for uploading Directories.
Tom Clegg [Mon, 27 Mar 2017 16:26:32 +0000 (12:26 -0400)]
Pin ws4py <0.4 (our websocket tests fail on 0.4.1)
No issue #
radhika [Fri, 24 Mar 2017 20:58:20 +0000 (16:58 -0400)]
3821: Rename collection file path
Tom Clegg [Fri, 24 Mar 2017 19:59:56 +0000 (15:59 -0400)]
11209: Remove unused imports.
Tom Clegg [Fri, 24 Mar 2017 19:59:26 +0000 (15:59 -0400)]
11209: Add tests for --unmount and --replace flags.
Tom Clegg [Fri, 24 Mar 2017 19:55:24 +0000 (15:55 -0400)]
11209: Fix missing import. Use context handler for standalone mode.
Tom Clegg [Fri, 24 Mar 2017 18:42:30 +0000 (14:42 -0400)]
Remove debug printf.
No issue #
Tom Clegg [Fri, 24 Mar 2017 18:37:22 +0000 (14:37 -0400)]
Remove -i flag from Rails3 pg_dump invocation.
No issue #
radhika [Fri, 24 Mar 2017 15:37:00 +0000 (11:37 -0400)]
3821: remove selection file in collection file row
radhika [Fri, 24 Mar 2017 14:26:56 +0000 (10:26 -0400)]
3821: added 'Remove selected files' to collection#show page.
Peter Amstutz [Fri, 24 Mar 2017 13:31:36 +0000 (09:31 -0400)]
Merge branch '8567-docker-migrator' refs #8567
Tom Clegg [Thu, 23 Mar 2017 22:06:01 +0000 (18:06 -0400)]
11209: Try unmounting at least once even if timeout=0.
Tom Clegg [Fri, 17 Mar 2017 20:32:10 +0000 (16:32 -0400)]
11209: "--unmount /path/..." unmounts /path and all fuse mounts below it.
Tom Clegg [Thu, 16 Mar 2017 20:49:49 +0000 (16:49 -0400)]
11209: Add arv-mount --unmount and --replace flags
Lucas Di Pentima [Thu, 23 Mar 2017 21:38:41 +0000 (18:38 -0300)]
7824: Updated arv-ls to use CollectionReader's keys() API instead of the old all_files() / all_streams() methods.
Peter Amstutz [Thu, 23 Mar 2017 20:16:33 +0000 (16:16 -0400)]
Merge branch '11325-no-broken-nodes' refs #11323, refs #11324, refs #11325
Peter Amstutz [Thu, 23 Mar 2017 17:30:35 +0000 (13:30 -0400)]
11323: Don't try to offer_arvados_pair on unpaired nodes which are being shut down.
Peter Amstutz [Thu, 23 Mar 2017 18:05:51 +0000 (14:05 -0400)]
11324: Fix crash in NodeManagerDaemonActor when receiving a node_can_shutdown
message for a node that has already been shut down.
Tom Clegg [Thu, 23 Mar 2017 20:10:48 +0000 (16:10 -0400)]
Merge branch '10766-install-ws'
closes #10766
Tom Clegg [Thu, 23 Mar 2017 19:56:44 +0000 (15:56 -0400)]
Merge branch '11065-rotate-logs'
closes #11065
Tom Clegg [Thu, 23 Mar 2017 19:56:16 +0000 (15:56 -0400)]
11065: Avoid scientific notation in PostgreSQL literal.
Tom Clegg [Thu, 23 Mar 2017 19:18:51 +0000 (15:18 -0400)]
11065: Update comments.
projects / arvados.git / log