Tom Clegg [Thu, 30 Oct 2014 17:43:34 +0000 (13:43 -0400)]
4088: Add usage docs to filterable.js
Tom Clegg [Thu, 30 Oct 2014 17:05:17 +0000 (13:05 -0400)]
3824: Bring back $! in error message, in case it's helpful.
Tom Clegg [Thu, 30 Oct 2014 17:02:56 +0000 (13:02 -0400)]
3824: Merge branch 'master' into 3824-crunch-container-setup
Tom Clegg [Thu, 30 Oct 2014 17:00:05 +0000 (13:00 -0400)]
3824: Use Data::Dumper instead of custom quoting to show srun/task exec args.
Tom Clegg [Wed, 29 Oct 2014 21:06:17 +0000 (17:06 -0400)]
4091: Use <=N instead of <N+1. Pass "uuid not in" filter to API instead of adding custom filter params.
Tim Pierce [Wed, 29 Oct 2014 20:23:08 +0000 (16:23 -0400)]
4040: clarify variable names
Per code review: give d1, d2, d3 more descriptive variable names.
radhika [Wed, 29 Oct 2014 19:23:45 +0000 (15:23 -0400)]
closes #4091
Merge branch '4091-test-infinite-scrolling'
radhika [Wed, 29 Oct 2014 19:23:07 +0000 (15:23 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
radhika [Wed, 29 Oct 2014 19:21:45 +0000 (15:21 -0400)]
4091: set the limit size to 50 for "Jobs and pipelines" tab.
Tim Pierce [Wed, 29 Oct 2014 19:12:47 +0000 (15:12 -0400)]
4040: update FUSE driver tests with stable fixtures
Added test fixtures specifically for FUSE driver tests.
Brett Smith [Wed, 29 Oct 2014 18:58:59 +0000 (14:58 -0400)]
Fix Node Manager test bug introduced by last commit.
Bad Brett, only running specific tests. No issue #.
Brett Smith [Wed, 29 Oct 2014 18:22:16 +0000 (14:22 -0400)]
Fix race condition in Node Manager shutdown tests.
ComputeNodeMonitorActor considers a shutdown when it's initialized.
Blocking on the subscription we send ensures that message is fully
processed before the tests continue. This is important because
several of them change the shutdown state immediately after, and that
might be seen by the internal shutdown consideration without this.
No issue #, but see
<https://ci.curoverse.com/job/arvados-api-server/1027/console>.
Tim Pierce [Wed, 29 Oct 2014 16:53:19 +0000 (12:53 -0400)]
Fix the goldang consarned FUSE tests again.
No issue #, dammit
Tim Pierce [Wed, 29 Oct 2014 16:07:07 +0000 (12:07 -0400)]
Merge branch '4088-collection-show-files-filter'
Refs #4088.
Tim Pierce [Wed, 29 Oct 2014 15:40:52 +0000 (11:40 -0400)]
4088: filter only on files
Only apply the regex filter to files; continue to process subdirectories
as normal in order to keep the appropriate filename hierarchy.
Phil Hodgson [Wed, 29 Oct 2014 15:39:56 +0000 (16:39 +0100)]
3618: Make tests pass: bugs were revealed in "Other objects" tab related to there not being any sorting going on there, etc.; add checks for HTML5 history and for nulls and undefineds
Tim Pierce [Wed, 29 Oct 2014 15:19:32 +0000 (11:19 -0400)]
4088: fix alignment for right-floating input field
Phil Hodgson [Wed, 29 Oct 2014 11:21:14 +0000 (12:21 +0100)]
Merge branch 'master' into 3618-column-ordering
Phil Hodgson [Wed, 29 Oct 2014 11:20:08 +0000 (12:20 +0100)]
3618: store in the browser history state the current sort settings for each tab
Ward Vandewege [Wed, 29 Oct 2014 02:18:37 +0000 (22:18 -0400)]
Improve config/application.yml.example for the API server and workbench:
* API server: define prefix_uuid in development mode
* workbench: add a production section
No issue #
Tim Pierce [Tue, 28 Oct 2014 21:26:58 +0000 (17:26 -0400)]
4088: code review feedback
* Filter files by regex before .take(10000)
* Added "regular expression" placeholder in the filter input box
* Issue a Rails "alert" div if the regex could not be parsed
* Test that we're actually viewing a collection when no matches are
found (and not a fiddlesticks page or something)
Peter Amstutz [Tue, 28 Oct 2014 20:05:42 +0000 (16:05 -0400)]
4031: Test for collection provenance/used_by
Peter Amstutz [Tue, 28 Oct 2014 18:18:10 +0000 (14:18 -0400)]
4031: Find for collection dependencies even in the middle of script parameter
fields. Server side collections with same PDH into a single entry with a
special name. Fix node descriptions, hyperlinks. More options to eliminate
certain node types for certain graphs to make them easier to read. Handle both
PDH and UUID when identifying collections.
Brett Smith [Tue, 28 Oct 2014 17:32:05 +0000 (13:32 -0400)]
Fix off-by-one error in Node Manager server calculations.
This bug prevented Node Manager from starting nodes for a job that
requested a number of nodes equal to the daemon's max_nodes setting.
No issue #.
radhika [Tue, 28 Oct 2014 17:16:43 +0000 (13:16 -0400)]
4091: update jobs fixture to set same created_at timestamp for some of the jobs.
radhika [Tue, 28 Oct 2014 16:18:17 +0000 (12:18 -0400)]
4091: enhance code to handle the case where there are more than one item in the next page matching the previous page's last object's created_at time.
Also, handle the case where the entire next page has the same created_at time as the previous page's last item; to keep things simple, stop scrolling in this case.
Tim Pierce [Tue, 28 Oct 2014 15:14:47 +0000 (11:14 -0400)]
4088: filter collection file view by regex
Added a "Filter" field for supplying a regular expression to filter
filenames. Updated integration tests.
Tom Clegg [Tue, 28 Oct 2014 14:59:40 +0000 (10:59 -0400)]
3824: Remove redundant addition of arvados package repo and key.
Tom Clegg [Tue, 28 Oct 2014 14:35:13 +0000 (10:35 -0400)]
3824: Add sources.list file missing from commit:
0f9aaf1
Phil Hodgson [Tue, 28 Oct 2014 10:48:46 +0000 (11:48 +0100)]
3618: remove unnecessary "raw" directive for the sort columns table header attribute
Tom Clegg [Tue, 28 Oct 2014 05:06:02 +0000 (01:06 -0400)]
3824: Fix up logging messages.
Tom Clegg [Tue, 28 Oct 2014 02:24:35 +0000 (22:24 -0400)]
3706: Merge branch 'master' into 3706-keep-warning
Tom Clegg [Tue, 28 Oct 2014 02:20:22 +0000 (22:20 -0400)]
3706: Remove automatic normalization. Add --normalize option to
arv-put. Add normalize() and stripped_manifest() methods to
CollectionReader. Clean up normalize code.
Tom Clegg [Tue, 28 Oct 2014 02:12:53 +0000 (22:12 -0400)]
3706: Consolidate more regular expressions into util package.
Tom Clegg [Tue, 28 Oct 2014 02:08:24 +0000 (22:08 -0400)]
3706: Do not leave zero-length file segment at end of stream after finish_current_file().
Tom Clegg [Tue, 28 Oct 2014 02:04:54 +0000 (22:04 -0400)]
3706: In CollectionReader, try fetching manifests before/after API
server when the ID is a Keep locator with/without a permission hint
respectively. Do not display a warning if the manifest is found one
way or the other.
Peter Amstutz [Mon, 27 Oct 2014 21:04:43 +0000 (17:04 -0400)]
4031: Refresh provenance helper graph generation to fix bugs and make better
use of available human readable names such as collections and components. Added tests.
radhika [Mon, 27 Oct 2014 20:38:38 +0000 (16:38 -0400)]
4091: retain filters in project contents collections and similar tabs.
radhika [Mon, 27 Oct 2014 20:24:07 +0000 (16:24 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
radhika [Mon, 27 Oct 2014 20:23:21 +0000 (16:23 -0400)]
4091: change project contents order from uuid to created_at.
Tim Pierce [Mon, 27 Oct 2014 20:13:12 +0000 (16:13 -0400)]
Merge branch '4015-collection-chooser-portable-data-hash'
Fixes #4015.
Tim Pierce [Mon, 27 Oct 2014 19:49:00 +0000 (15:49 -0400)]
4015: update FUSE mount tests (again)
Tim Pierce [Mon, 27 Oct 2014 18:06:12 +0000 (14:06 -0400)]
4015: simplify integration tests
Responding to code review in #4015-8:
We can (and should) test that the collection portable_data_hash is
recorded in individual tests without adding explicit new tests or
fixtures.
Updated test 'Create and run a pipeline' and the helper
create_and_run_pipeline_in_aproject to check that the collection
portable_data_hash, uuid and name have been recorded correctly in the
Advanced tab.
radhika [Mon, 27 Oct 2014 17:46:33 +0000 (13:46 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
Tom Clegg [Mon, 27 Oct 2014 17:35:34 +0000 (13:35 -0400)]
Merge branch '4297-dispatch-load' refs #4297
Tom Clegg [Mon, 27 Oct 2014 17:35:28 +0000 (13:35 -0400)]
3706: Silence fallback-to-keep warning, show both errors (API and Keep) if both fail.
Tom Clegg [Mon, 27 Oct 2014 16:54:16 +0000 (12:54 -0400)]
4297: Merge branch 'master' into 4297-dispatch-load
Tom Clegg [Mon, 27 Oct 2014 16:53:28 +0000 (12:53 -0400)]
4297: Rename @have_tags -> @job_tags, @have_commits -> @fetched_commits. Add comments.
Tom Clegg [Mon, 27 Oct 2014 16:52:52 +0000 (12:52 -0400)]
4297: Use save! instead of save to ensure failures get logged.
Tom Clegg [Thu, 23 Oct 2014 20:39:07 +0000 (16:39 -0400)]
3824: Use keep volumes big enough to store the arvados/jobs docker image. Do not clobber settings.conf if not starting apiserver.
Tom Clegg [Thu, 23 Oct 2014 20:38:04 +0000 (16:38 -0400)]
3824: Do not say "There are jobs in the queue ahead of this one" if queue_position is unknown.
Tom Clegg [Thu, 23 Oct 2014 20:35:05 +0000 (16:35 -0400)]
3824: Add dnsmasq to compute images, to make docker-in-docker work. refs #3333
Tom Clegg [Thu, 23 Oct 2014 17:19:31 +0000 (13:19 -0400)]
3824: Use a docker volume for TASK_WORK, clean up env var and tmp dir handling, improve logging.
radhika [Mon, 27 Oct 2014 15:38:01 +0000 (11:38 -0400)]
closes #4285
Merge branch '4285-view-download-collection-subdir-files'
radhika [Mon, 27 Oct 2014 15:28:19 +0000 (11:28 -0400)]
4285: use regexp to prepent ./ to file path
Phil Hodgson [Sun, 26 Oct 2014 12:25:02 +0000 (13:25 +0100)]
3618: best guesses about which database columns could be used for sorting (not certain about the descriptions, though, in many cases)
Phil Hodgson [Sun, 26 Oct 2014 12:24:19 +0000 (13:24 +0100)]
3618: When changing to sorting on a different column, make sure the directional indicator of the previous is removed.
Phil Hodgson [Sat, 25 Oct 2014 18:57:02 +0000 (20:57 +0200)]
3618: Add Workbench integration test for sorting data collections
Phil Hodgson [Sat, 25 Oct 2014 18:56:23 +0000 (20:56 +0200)]
3618: correctly propagate the ordering parameters when scrolling
radhika [Sat, 25 Oct 2014 14:01:40 +0000 (10:01 -0400)]
4285: prepend './' to file path being retrieved when it is in a subdir in a collection.
Phil Hodgson [Sat, 25 Oct 2014 08:18:57 +0000 (10:18 +0200)]
3618: Add some basic API server tests for the sort feature
radhika [Fri, 24 Oct 2014 19:01:55 +0000 (15:01 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
radhika [Fri, 24 Oct 2014 19:00:09 +0000 (15:00 -0400)]
4091: add offset to next page url
Tim Pierce [Fri, 24 Oct 2014 17:58:15 +0000 (13:58 -0400)]
Merge branch '3699-arv-copy'
Refs #3699.
Tim Pierce [Fri, 24 Oct 2014 17:57:23 +0000 (13:57 -0400)]
3699: fix namespace clash: rename module to arv_copy
Prevents confusion with the Python 'copy' module.
No issue # (bug fix)
Phil Hodgson [Fri, 24 Oct 2014 17:40:01 +0000 (19:40 +0200)]
3618: replace js use of == and != with the more predictable === and !==
Tim Pierce [Fri, 24 Oct 2014 17:20:48 +0000 (13:20 -0400)]
Merge branch '3699-arv-copy'
Closes #3699.
radhika [Fri, 24 Oct 2014 14:19:19 +0000 (10:19 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
radhika [Fri, 24 Oct 2014 14:17:56 +0000 (10:17 -0400)]
4091: adjust the test fixture to use less data to match the limit size of 100 for the Jobs and pipelines tab in project.
Peter Amstutz [Fri, 24 Oct 2014 14:13:56 +0000 (10:13 -0400)]
Increase the timeout on "lots of events" websocket test. refs #4295
Peter Amstutz [Fri, 24 Oct 2014 13:03:07 +0000 (09:03 -0400)]
Merge branch '4295-efficient-websockets' closes #4295
Peter Amstutz [Fri, 24 Oct 2014 13:02:40 +0000 (09:02 -0400)]
4295: Use EventMachine::schedule when there is potentially more events to send instead of pushing an event to the channel (which wakes up all listeners).
Peter Amstutz [Fri, 24 Oct 2014 12:47:45 +0000 (08:47 -0400)]
4295: Fix typo in comment
Phil Hodgson [Fri, 24 Oct 2014 12:06:45 +0000 (14:06 +0200)]
Merge branch 'master' into 3618-column-ordering
radhika [Fri, 24 Oct 2014 10:10:50 +0000 (06:10 -0400)]
Merge branch 'master' into 4091-test-infinite-scrolling
Tim Pierce [Thu, 23 Oct 2014 22:35:19 +0000 (18:35 -0400)]
Merge branch 'master' into 4015-collection-chooser-portable-data-hash
Tim Pierce [Thu, 23 Oct 2014 22:34:03 +0000 (18:34 -0400)]
4015: fix pipeline instance tests
radhika [Thu, 23 Oct 2014 22:01:02 +0000 (18:01 -0400)]
closes #4195
Merge branch '4195-pipeline-tutorial'
radhika [Thu, 23 Oct 2014 22:00:12 +0000 (18:00 -0400)]
Merge branch 'master' into 4195-pipeline-tutorial
radhika [Thu, 23 Oct 2014 21:59:04 +0000 (17:59 -0400)]
4195: update workbench dashboard pic
Ward Vandewege [Thu, 23 Oct 2014 21:32:00 +0000 (17:32 -0400)]
Merge branch '4186-install-doc-improvements'
refs #4186
Ward Vandewege [Thu, 23 Oct 2014 21:31:38 +0000 (17:31 -0400)]
Merge branch 'master' into 4186-install-doc-improvements
radhika [Thu, 23 Oct 2014 21:24:29 +0000 (17:24 -0400)]
Merge branch 'master' into 4195-pipeline-tutorial
radhika [Thu, 23 Oct 2014 21:23:00 +0000 (17:23 -0400)]
closes #4228
Merge branch '4228-collection-subdir-files'
radhika [Thu, 23 Oct 2014 21:03:44 +0000 (17:03 -0400)]
Merge branch 'master' into 4195-pipeline-tutorial
Tim Pierce [Thu, 23 Oct 2014 21:00:54 +0000 (17:00 -0400)]
4015: test recording collection hashes for pipeline inputs
Tim Pierce [Wed, 22 Oct 2014 16:44:53 +0000 (12:44 -0400)]
4015: use portable_data_hash to populate chooser
Ward Vandewege [Thu, 23 Oct 2014 20:58:53 +0000 (16:58 -0400)]
Add install dependencies for the SSO server.
refs #4186
radhika [Thu, 23 Oct 2014 20:52:06 +0000 (16:52 -0400)]
Merge branch 'master' into 4228-collection-subdir-files
Conflicts:
apps/workbench/test/integration/collections_test.rb
radhika [Thu, 23 Oct 2014 20:36:32 +0000 (16:36 -0400)]
refs #4227
Merge branch '4227-test-fix'
Ward Vandewege [Thu, 23 Oct 2014 20:29:31 +0000 (16:29 -0400)]
Explain the Keepstore's -permission-key-file argument and API server's
blob_signing_key configuration value.
refs #4186
radhika [Thu, 23 Oct 2014 20:27:02 +0000 (16:27 -0400)]
no issue #
radhika [Thu, 23 Oct 2014 20:24:00 +0000 (16:24 -0400)]
no issue #
Merge branch 'master' of git.curoverse.com:arvados
radhika [Thu, 23 Oct 2014 20:22:50 +0000 (16:22 -0400)]
refs #4227 - update strptime format for parsing pipeline start and finish time.
Peter Amstutz [Thu, 23 Oct 2014 20:22:48 +0000 (16:22 -0400)]
4295: Abort on NoMemoryError
Ward Vandewege [Thu, 23 Oct 2014 19:59:23 +0000 (15:59 -0400)]
First set of improvements:
* Suggest skipping SSO server installation for now, until we upgrade that codebase
* Be more explicit about the desired values for arvados_login_base and
arvados_v1_base in the workbench installation instructions.
refs #4186
Peter Amstutz [Thu, 23 Oct 2014 19:52:04 +0000 (15:52 -0400)]
4295: Add test that large numbers of events are handled efficiently and correctly.
Brett Smith [Thu, 23 Oct 2014 19:44:35 +0000 (15:44 -0400)]
Merge branch '4139-clean-api-node-cruft-wip'
Refs #4139, #4274. Closes #4276.
Brett Smith [Thu, 23 Oct 2014 19:36:52 +0000 (15:36 -0400)]
4139: Node create API requires a node parameter.
This makes it more consistent with other API create methods.
Brett Smith [Tue, 21 Oct 2014 14:58:59 +0000 (10:58 -0400)]
4139: Remove cloud node setup code from API server.
This code has never been used in production, and its functionality has
officially been assumed by Node Manager.
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