Ward Vandewege [Thu, 23 Oct 2014 21:32:00 +0000 (17:32 -0400)]
Merge branch '4186-install-doc-improvements'
refs #4186
Ward Vandewege [Thu, 23 Oct 2014 21:31:38 +0000 (17:31 -0400)]
Merge branch 'master' into 4186-install-doc-improvements
radhika [Thu, 23 Oct 2014 21:23:00 +0000 (17:23 -0400)]
closes #4228
Merge branch '4228-collection-subdir-files'
Ward Vandewege [Thu, 23 Oct 2014 20:58:53 +0000 (16:58 -0400)]
Add install dependencies for the SSO server.
refs #4186
radhika [Thu, 23 Oct 2014 20:52:06 +0000 (16:52 -0400)]
Merge branch 'master' into 4228-collection-subdir-files
Conflicts:
apps/workbench/test/integration/collections_test.rb
radhika [Thu, 23 Oct 2014 20:36:32 +0000 (16:36 -0400)]
refs #4227
Merge branch '4227-test-fix'
Ward Vandewege [Thu, 23 Oct 2014 20:29:31 +0000 (16:29 -0400)]
Explain the Keepstore's -permission-key-file argument and API server's
blob_signing_key configuration value.
refs #4186
radhika [Thu, 23 Oct 2014 20:27:02 +0000 (16:27 -0400)]
no issue #
radhika [Thu, 23 Oct 2014 20:24:00 +0000 (16:24 -0400)]
no issue #
Merge branch 'master' of git.curoverse.com:arvados
radhika [Thu, 23 Oct 2014 20:22:50 +0000 (16:22 -0400)]
refs #4227 - update strptime format for parsing pipeline start and finish time.
Ward Vandewege [Thu, 23 Oct 2014 19:59:23 +0000 (15:59 -0400)]
First set of improvements:
* Suggest skipping SSO server installation for now, until we upgrade that codebase
* Be more explicit about the desired values for arvados_login_base and
arvados_v1_base in the workbench installation instructions.
refs #4186
Brett Smith [Thu, 23 Oct 2014 19:44:35 +0000 (15:44 -0400)]
Merge branch '4139-clean-api-node-cruft-wip'
Refs #4139, #4274. Closes #4276.
Brett Smith [Thu, 23 Oct 2014 19:36:52 +0000 (15:36 -0400)]
4139: Node create API requires a node parameter.
This makes it more consistent with other API create methods.
Brett Smith [Tue, 21 Oct 2014 14:58:59 +0000 (10:58 -0400)]
4139: Remove cloud node setup code from API server.
This code has never been used in production, and its functionality has
officially been assumed by Node Manager.
radhika [Thu, 23 Oct 2014 19:37:52 +0000 (15:37 -0400)]
refs #4227 - rescue from any error in parsing pipeline start and finish time so that jenkins runs do not choke on these failures.
Peter Amstutz [Thu, 23 Oct 2014 17:53:31 +0000 (13:53 -0400)]
Increase limit for collections controller querying same portable_data_hash as
workaround to fix tests, refs #4058, but really needs a proper fix, refs #3400
Peter Amstutz [Thu, 23 Oct 2014 15:18:54 +0000 (11:18 -0400)]
Merge branch '4058-workbench-collection-redirect' closes #4058
Peter Amstutz [Thu, 23 Oct 2014 15:18:29 +0000 (11:18 -0400)]
4058: Typo fix "collection" -> "collections"
Peter Amstutz [Thu, 23 Oct 2014 13:38:15 +0000 (09:38 -0400)]
4058: Tweaked presentation per review feedback
radhika [Thu, 23 Oct 2014 02:25:46 +0000 (22:25 -0400)]
closes #4026
Merge branch '4026-project-move-admin'
radhika [Thu, 23 Oct 2014 02:24:37 +0000 (22:24 -0400)]
4026: simplify writable check
radhika [Thu, 23 Oct 2014 00:10:17 +0000 (20:10 -0400)]
Merge branch 'master' into 4026-project-move-admin
radhika [Wed, 22 Oct 2014 23:38:11 +0000 (19:38 -0400)]
Merge branch 'master' into 4228-collection-subdir-files
radhika [Wed, 22 Oct 2014 23:12:55 +0000 (19:12 -0400)]
4228: add test for combining files from a collection subdir.
radhika [Wed, 22 Oct 2014 21:18:25 +0000 (17:18 -0400)]
4228: fix arv_normalize input when a file in a subdir of a collection is being combined.
radhika [Wed, 22 Oct 2014 20:17:50 +0000 (16:17 -0400)]
4228: fix arv_normalize input when a file in a subdir of a collection is being combined.
Brett Smith [Wed, 22 Oct 2014 19:13:09 +0000 (15:13 -0400)]
4137: Fix bad state reference in Node Manager daemon.
Refs #4137.
radhika [Wed, 22 Oct 2014 18:57:27 +0000 (14:57 -0400)]
closes #4227
Merge branch '4227-date-display'
radhika [Wed, 22 Oct 2014 18:55:55 +0000 (14:55 -0400)]
Merge branch 'master' into 4227-date-display
Conflicts:
apps/workbench/test/integration/projects_test.rb
radhika [Wed, 22 Oct 2014 18:46:34 +0000 (14:46 -0400)]
refs #4091 - comment out the test that is failing intermittently in jenkins env.
Brett Smith [Wed, 22 Oct 2014 18:28:45 +0000 (14:28 -0400)]
4139: Fix race condition in Node Manager tests.
Get a reference to the monitor mock earlier, before the daemon starts
working with it. Otherwise, we might get inconsistent state results.
Refs #4139.
Tom Clegg [Wed, 22 Oct 2014 18:01:10 +0000 (14:01 -0400)]
Report "swap" memory statistic if kernel provides it. refs #4185
radhika [Wed, 22 Oct 2014 17:12:10 +0000 (13:12 -0400)]
4227: much simplified date display test
radhika [Wed, 22 Oct 2014 15:55:02 +0000 (11:55 -0400)]
Merge branch 'master' into 4227-date-display
Tom Clegg [Wed, 22 Oct 2014 15:01:55 +0000 (11:01 -0400)]
Merge branch '3826-crunchstat-netstats' closes #3826
Tom Clegg [Wed, 22 Oct 2014 14:57:03 +0000 (10:57 -0400)]
3826: Merge branch 'master' into 3826-crunchstat-netstats
Brett Smith [Wed, 22 Oct 2014 14:35:21 +0000 (10:35 -0400)]
Merge branch '4139-node-manager-race-fix-wip'
Refs #4139, #4275.
Brett Smith [Wed, 22 Oct 2014 14:34:23 +0000 (10:34 -0400)]
4139: Node Manager more closely tracks nodes it boots.
When using Node Manager on EC2, we saw a race condition where a node
would finish setting up, but would not be returned in node listings
right away. This adds a "booted" node state to the daemon, where a
node booted by Node Manager is assumed to be up and running unless it
disappears from the listing *after* being listed. It's escalated to
the normal workflow after it appears in a listing.
Brett Smith [Wed, 22 Oct 2014 14:02:33 +0000 (10:02 -0400)]
4139: Node Manager supports subscribing to shutdown events.
This is necessary to fix a race condition. The daemon needs to be
able to track nodes that it has booted even if they don't appear in
listings.
Tom Clegg [Tue, 21 Oct 2014 21:28:53 +0000 (17:28 -0400)]
Merge branch '4266-log-performance' refs #4266
Tom Clegg [Tue, 21 Oct 2014 21:12:07 +0000 (17:12 -0400)]
4266: Merge branch 'master' into 4266-log-performance
Tom Clegg [Tue, 21 Oct 2014 20:36:13 +0000 (16:36 -0400)]
4266: Add word missing from comment.
Tom Clegg [Tue, 21 Oct 2014 20:35:41 +0000 (16:35 -0400)]
4266: Use each_line as enumerator instead of building an array with lines.each.
Tom Clegg [Tue, 21 Oct 2014 20:34:53 +0000 (16:34 -0400)]
4266: Add missing "next" statement, oops.
radhika [Tue, 21 Oct 2014 19:57:47 +0000 (15:57 -0400)]
4227: update fixtures to use bigger finish times
radhika [Tue, 21 Oct 2014 19:44:46 +0000 (15:44 -0400)]
Merge branch 'master' of git.curoverse.com:arvados into 4227-date-display
Brett Smith [Tue, 21 Oct 2014 18:35:49 +0000 (14:35 -0400)]
Merge branch '4139-node-manager-polling-logging-wip'
Refs #4275, #4139.
Brett Smith [Tue, 21 Oct 2014 18:31:44 +0000 (14:31 -0400)]
4139: Improve scheduling of Node Manager polls.
* Catch all exceptions, so that we keep polling no matter what
happens. Use CLIENT_ERRORS as a hint about how much logging we
need.
* Make the next poll time calculation a little less stateful and
easier to follow.
* Add tests for poll scheduling.
Brett Smith [Tue, 21 Oct 2014 18:13:37 +0000 (14:13 -0400)]
4139: Improve logging in Node Manager poll actors.
Brett Smith [Tue, 21 Oct 2014 15:19:05 +0000 (11:19 -0400)]
4139: Node Manager callback actor avoids redundant delivery calls.
This helps make it more responsive when it receives a shutdown
request.
radhika [Tue, 21 Oct 2014 17:48:35 +0000 (13:48 -0400)]
4227: some more test and fixture updates.
Tom Clegg [Tue, 21 Oct 2014 17:46:00 +0000 (13:46 -0400)]
4266: Tweak long-line handling.
Tom Clegg [Tue, 21 Oct 2014 17:29:05 +0000 (13:29 -0400)]
4266: Fix OOM when stderr has a lot of data with no newlines.
radhika [Tue, 21 Oct 2014 17:28:57 +0000 (13:28 -0400)]
4227: minor test upadtes
Tom Clegg [Tue, 21 Oct 2014 17:05:36 +0000 (13:05 -0400)]
4266: Clean up streambuf.split(newline) loop.
radhika [Tue, 21 Oct 2014 17:00:01 +0000 (13:00 -0400)]
Merge branch 'master' into 4227-date-display
radhika [Tue, 21 Oct 2014 16:56:33 +0000 (12:56 -0400)]
closes #4054
Merge branch '4054-sharing-email'
radhika [Tue, 21 Oct 2014 16:54:32 +0000 (12:54 -0400)]
4091: the test with 200 jobs and 10 pipelines is failing in jenkins env. reduce the number of pipelines to 2 to see if shorter runtime helps.
radhika [Tue, 21 Oct 2014 16:48:35 +0000 (12:48 -0400)]
Merge branch 'master' into 4054-sharing-email
radhika [Tue, 21 Oct 2014 16:47:37 +0000 (12:47 -0400)]
4227: AM / PM indicator fix
Ward Vandewege [Tue, 21 Oct 2014 14:11:43 +0000 (10:11 -0400)]
Arvados python SDK: do not blow up when HOME is not set.
No issue #
Tom Clegg [Mon, 20 Oct 2014 21:30:30 +0000 (17:30 -0400)]
4266: Fix log processing performance.
* Remove "max log table entries per job" limit (and its horrible
memory leak).
* When logs are coming fast, but under all throttle thresholds, group
them into fewer rows in the logs table.
* Optimize performance by making a short code path when any threshold
is exceeded. Now capable of ~200 MiB/s (of 100-character lines) on
lappy386.
* Bring stream buffer back up to a reasonable size, add a comment to
protect it from future style tweaks.
* Simplify time calculations by storing time-to-reopen-throttle
instead of time-throttle-last-opened.
* Log "# bytes skipped" to stderr (sysadmin logs) too, not just the
logs table.
Peter Amstutz [Mon, 20 Oct 2014 19:36:36 +0000 (15:36 -0400)]
Merge branch '3787-docker-docs' closes #3787
Peter Amstutz [Mon, 20 Oct 2014 19:35:48 +0000 (15:35 -0400)]
3787: docker group -> @docker@ group for consistency
Peter Amstutz [Mon, 20 Oct 2014 19:23:21 +0000 (15:23 -0400)]
3787: Add note about needing to be in docker group. A few other minor text tweaks.
Peter Amstutz [Mon, 20 Oct 2014 18:12:41 +0000 (14:12 -0400)]
3787: Update title, grammar, add "Share Docker images", add job-pipeline-ref.html based on review feedback.
radhika [Mon, 20 Oct 2014 17:49:08 +0000 (13:49 -0400)]
Merge branch 'master' into 4026-project-move-admin
Conflicts:
apps/workbench/test/integration/projects_test.rb
radhika [Mon, 20 Oct 2014 17:34:10 +0000 (13:34 -0400)]
Merge branch 'master' into 4054-sharing-email
Tom Clegg [Mon, 20 Oct 2014 16:34:58 +0000 (12:34 -0400)]
3826: Merge branch 'master' into 3826-crunchstat-netstats
Tom Clegg [Mon, 20 Oct 2014 16:18:48 +0000 (12:18 -0400)]
3826: Fix confusing reuse of variable name.
Tom Clegg [Mon, 20 Oct 2014 16:18:13 +0000 (12:18 -0400)]
3826: Use strconv instead of scanner + sscanf.
Tom Clegg [Mon, 20 Oct 2014 16:10:12 +0000 (12:10 -0400)]
3826: Use global logChan. Use ioutil.ReadFile.
Tom Clegg [Mon, 20 Oct 2014 15:57:27 +0000 (11:57 -0400)]
3826: Clean up slice initialization.
Peter Amstutz [Mon, 20 Oct 2014 15:39:13 +0000 (11:39 -0400)]
4058: Tests for portable data hash redirection and multiple matches page.
radhika [Mon, 20 Oct 2014 15:25:19 +0000 (11:25 -0400)]
closes #4062
Merge branch '4062-infinite-scroll-repeat-TC'
Tom Clegg [Mon, 20 Oct 2014 14:47:32 +0000 (10:47 -0400)]
4062: Do not clobber next_page_url filters with local filters.
Peter Amstutz [Mon, 20 Oct 2014 14:45:10 +0000 (10:45 -0400)]
4058: If a portable data hash correpsonds to a single collection, automatically
redirect to the collection page. If not, show a special "menu" page listing
the matching collections.
Tom Clegg [Mon, 20 Oct 2014 14:24:10 +0000 (10:24 -0400)]
4062: Merge branch 'master' into 4062-infinite-scroll-repeat-TC
radhika [Mon, 20 Oct 2014 13:22:35 +0000 (09:22 -0400)]
4026: admin user can move a project under another user's home project.
radhika [Sat, 18 Oct 2014 00:37:34 +0000 (20:37 -0400)]
4054: minor test update
radhika [Sat, 18 Oct 2014 00:09:29 +0000 (20:09 -0400)]
Merge branch 'master' into 4054-sharing-email
radhika [Fri, 17 Oct 2014 22:40:28 +0000 (18:40 -0400)]
4054: show email address in sharing tab and update test to verify.
Peter Amstutz [Fri, 17 Oct 2014 20:54:31 +0000 (16:54 -0400)]
Merge branch '3698-invalid-output-of' closes #3698
Ward Vandewege [Fri, 17 Oct 2014 19:47:11 +0000 (15:47 -0400)]
Make sure to use httpclient 2.5.0 or higher for Workbench. Older
versions force the use of SSLv3, which is no longer advisable now that
Poodle is a thing.
No issue #
Peter Amstutz [Fri, 17 Oct 2014 19:36:49 +0000 (15:36 -0400)]
3698: Fix: components keys are symbols, not strings. Tweaked error message to
tell you what the invalid output_of actually is.
Peter Amstutz [Fri, 17 Oct 2014 19:17:01 +0000 (15:17 -0400)]
3698: Add check that output_of refers to an actual component.
Peter Amstutz [Fri, 17 Oct 2014 17:58:50 +0000 (13:58 -0400)]
4083: Searched for everything using strptime and added import _strptime where it was missing. closes #4083
Tom Clegg [Fri, 17 Oct 2014 15:45:33 +0000 (11:45 -0400)]
Merge branch '4229-close-files' closes #4229
Nancy Ouyang [Fri, 17 Oct 2014 13:52:17 +0000 (09:52 -0400)]
added by_id subdirectory notes and arvados#collection
No issue #.
Brett Smith [Fri, 17 Oct 2014 14:22:01 +0000 (10:22 -0400)]
4239: Update Python SDK for google-api-python-client 1.3.
This package renames the module from apiclient to googleapiclient. It
provides a shim apiclient module for compatibility, but it only
exports the appropriate names, not real submodules. Using it requires
changing imports like
import apiclient.errors
to
from apiclient import errors
This approach works (has been tested) with both versions 1.2 and 1.3.
Closes #4239.
Brett Smith [Fri, 17 Oct 2014 12:36:54 +0000 (08:36 -0400)]
4189: Diagnostics suite doesn't try to clear Rails cache.
Refs #4189.
radhika [Fri, 17 Oct 2014 03:28:29 +0000 (23:28 -0400)]
Merge branch 'master' into 4062-infinite-scroll-repeat-issue
Conflicts:
services/api/test/fixtures/collections.yml
services/api/test/fixtures/jobs.yml
radhika [Fri, 17 Oct 2014 03:19:57 +0000 (23:19 -0400)]
4062: Do not include offset in the next_page_href when objects of multiple kinds are being fetched; instead, we will rely on created_at filter alone.
Updated the tests and fixtures to expect all 200+ objects in the pipelines and jobs tab.
The test however is still not working as the created_at filter based fetch is not working.
Brett Smith [Thu, 16 Oct 2014 21:23:57 +0000 (17:23 -0400)]
Merge branch '4189-workbench-project-admin-attr-editing-wip'
Closes #4189, #4202.
Brett Smith [Wed, 15 Oct 2014 18:04:12 +0000 (14:04 -0400)]
4189: Workbench lets users with write permission rename objects in projects.
The key part of this commit are the changes to ApplicationHelper.
There's also some refactoring to more consistently answer questions
about whether or not an attribute is editable.
There are also some tests in here that I wrote while I was tracking
down the problem. They seem like a useful addition.
Brett Smith [Wed, 15 Oct 2014 17:29:48 +0000 (13:29 -0400)]
4189: Workbench tests clear more state during teardown.
I'm working on some new tests that pick up on stale state without
these changes.
Brett Smith [Thu, 16 Oct 2014 21:00:39 +0000 (17:00 -0400)]
4189: Document the API server's writable_by field.
Tom Clegg [Thu, 16 Oct 2014 20:17:51 +0000 (16:17 -0400)]
4189: Add writable_by to User API response, so writable_by is available for every owner_uuid.
Tom Clegg [Thu, 16 Oct 2014 20:11:13 +0000 (16:11 -0400)]
4189: Admit in writable_by that an object is writable when its owner_uuid is writable.
Tom Clegg [Thu, 16 Oct 2014 20:09:16 +0000 (16:09 -0400)]
4189: Look up owner's writable_by when API did not provide writable_by for the object in question.
projects / arvados.git / log