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Merge branch 'master' into 8876-work-unit
[arvados.git] / sdk / cwl /
2016-05-31 radhikaMerge branch 'master' into 8876-work-unit tree | commitdiff
2016-05-31 Brett Smith9316: Include documentation in CWL SDK. tree | commitdiff
2016-05-20 Tom CleggMerge branch 'wtsi-hgi-9231-rename-redunancy-to-replica... tree | commitdiff
2016-05-19 Peter AmstutzMerge branch '8653-cwl-runner-handle-files' closes... tree | commitdiff
2016-05-19 Peter Amstutz8653: Fix tests. tree | commitdiff
2016-05-19 Peter Amstutz8653: Use load_tool.fetch_document() instead of Loader... tree | commitdiff
2016-05-19 Peter Amstutz8653: add cwlVersion so file validate correctly. tree | commitdiff
2016-05-19 Peter Amstutz8653: Fix pathmapper API tree | commitdiff
2016-05-19 Peter Amstutz8653: Set basedir for CollectionFsAccess tree | commitdiff
2016-05-18 Peter Amstutz8653: cwl-runner crunch script rewrites keep file paths... tree | commitdiff
2016-05-03 Peter AmstutzMerge branch '8998-optimize-decode-www-form-component... tree | commitdiff
2016-05-02 Tom CleggMerge branch '8653-cwl-to-template' tree | commitdiff
2016-05-02 Tom Clegg8653: Add arvados-cwl-runner --create-template flag tree | commitdiff
2016-05-02 Tom Clegg8653: DRY testing code. tree | commitdiff
2016-05-02 Tom Clegg8653: Turn off debug messages / verbose logging in... tree | commitdiff
2016-05-02 Tom Clegg8653: Fix whitespace. tree | commitdiff
2016-04-26 Peter AmstutzMerge branch '8931-event-thread-catch-exceptions' close... tree | commitdiff
2016-04-21 radhikacloses #8936 tree | commitdiff
2016-04-21 Peter AmstutzPin bump cwltool dependency and pin version so it doesn... tree | commitdiff
2016-04-12 radhikaMerge branch 'master' into 8724-keep-block-check-script tree | commitdiff
2016-04-11 Peter AmstutzAdd --help to test_with_arvbox.sh, no issue # tree | commitdiff
2016-04-10 Peter AmstutzMerge branch '8799-make-drained-nodes-idle' closes... tree | commitdiff
2016-04-07 radhikaMerge branch 'master' into 7658-websockets-reconnect... tree | commitdiff
2016-04-06 Brett SmithMerge branch '8879-cwl-runner-job-owner-wip' tree | commitdiff
2016-04-06 Brett Smith8879: Clean indentation in CWL SDK tests. tree | commitdiff
2016-04-06 Brett Smith8879: cwl-runner --submit respects --project-uuid. tree | commitdiff
2016-04-01 Peter AmstutzMerge branch '8816-compute-node-update-exception' close... tree | commitdiff
2016-04-01 Brett SmithMerge branch '8782-reapchildren-after-signal-wip' tree | commitdiff
2016-04-01 Peter AmstutzMerge branch '8857-cwl-job-reuse' closes #8857 tree | commitdiff
2016-04-01 Peter AmstutzMerge branch 'master' into 8857-cwl-job-reuse tree | commitdiff
2016-03-31 Peter AmstutzMerge branch '8840-lock-job-record' closes #8840 tree | commitdiff
2016-03-31 Peter AmstutzMerge branch '8654-arv-jobs-cwl-runner' closes #8654 tree | commitdiff
2016-03-31 Peter Amstutz8654: Update test because input cwl files changed. tree | commitdiff
2016-03-31 Peter Amstutz8654: Fix versionstring(). Improve help text / comment... tree | commitdiff
2016-03-31 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-31 Peter Amstutz8654: Rename tests/inp/ to test/input/ tree | commitdiff
2016-03-31 Peter Amstutz8857: Add --ignore-docker-for-reuse option to assist... tree | commitdiff
2016-03-30 Peter Amstutz8654: Add missing test_submit tree | commitdiff
2016-03-30 Peter Amstutz8654: Add comments tree | commitdiff
2016-03-30 Peter Amstutz8654: Print uuid of uploaded docker image on stderr... tree | commitdiff
2016-03-30 radhikaMerge branch 'master' into 8703-job-components tree | commitdiff
2016-03-30 Peter Amstutz8654: Update test_with_arvbox.sh tree | commitdiff
2016-03-29 Peter Amstutz8654: Fix version string produced by arvados-cwl-runner. tree | commitdiff
2016-03-29 Peter AmstutzFix sdk/cwl test refs #8815 tree | commitdiff
2016-03-29 Peter AmstutzMerge branch '8815-crunchrunner-everywhere' closes... tree | commitdiff
2016-03-29 Peter AmstutzMerge branch '8815-crunchrunner-everywhere' into 8654... tree | commitdiff
2016-03-29 Peter Amstutz8654: Make --submit --wait the default mode. tree | commitdiff
2016-03-29 Peter Amstutz8815: Rely on system-provided crunchrunner. Also use... tree | commitdiff
2016-03-28 Peter Amstutz8654: Bump cwltool version dependency and print cwl... tree | commitdiff
2016-03-28 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-25 Peter Amstutz8654: Passes 100% CWL conformance tests using running... tree | commitdiff
2016-03-25 Peter Amstutz8654: --version reports versions for arvados-cwl-runner... tree | commitdiff
2016-03-23 Peter AmstutzFix merge conflict. refs #8766 tree | commitdiff
2016-03-23 Peter AmstutzMerge branch '8766-cwl-collection-project' tree | commitdiff
2016-03-23 Peter AmstutzMerge branch 'master' into 8766-cwl-collection-project tree | commitdiff
2016-03-23 Peter AmstutzMerge branch '8766-cwl-collection-project' into 8654... tree | commitdiff
2016-03-23 Peter Amstutz8766: Refactor logic to copy output collection and... tree | commitdiff
2016-03-23 Ward VandewegeFix sdk/cwl tests after commit 9df4d7da24ef8be639af1ab8... tree | commitdiff
2016-03-22 Peter Amstutz8766: Port logic from arv-run-pipeline-instance for... tree | commitdiff
2016-03-22 Peter Amstutz8654: Bump cwltool version tree | commitdiff
2016-03-22 Peter Amstutz8654: Use iterator instead of readlines() when going... tree | commitdiff
2016-03-22 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-22 Peter AmstutzCrunchrunner fix connect os.Stderr to cmd.Stderr &... tree | commitdiff
2016-03-22 Peter Amstutz8654: Remove print statements. tree | commitdiff
2016-03-22 Peter Amstutz8654: Handle error on capturing runner output tree | commitdiff
2016-03-22 Peter Amstutz8654: Support --quiet tree | commitdiff
2016-03-22 Peter Amstutz8654: Support waiting for submitted runner job to complete tree | commitdiff
2016-03-22 Peter Amstutz8654: Upload Docker images tree | commitdiff
2016-03-22 Peter Amstutz8654: Bump arvados-cwl-runner version dependency on... tree | commitdiff
2016-03-21 Peter Amstutz8654: Bump arvados-cwl-runner version dependency on... tree | commitdiff
2016-03-21 Peter Amstutz8654: Add runner job to pipeline instance. tree | commitdiff
2016-03-21 Peter Amstutz8654: Scanning for and uploading dependencies for submi... tree | commitdiff
2016-03-21 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-18 Peter AmstutzFix log scanning for "crunchrunner: $(task.outdir)... tree | commitdiff
2016-03-17 Peter Amstutz8654: Resource upload WIP tree | commitdiff
2016-03-17 Peter AmstutzImprove exception reporting for arvados-cwl-runner... tree | commitdiff
2016-03-16 radhikaMerge branch 'master' into 8554-trash-untrash-unix... tree | commitdiff
2016-03-16 Peter AmstutzMerge branch 'master' into 6518-crunch2-dispatch-slurm tree | commitdiff
2016-03-15 Tom CleggMerge branch '8491-import-build-tools' refs #8491 tree | commitdiff
2016-03-14 Peter AmstutzReally fix cwl-runner tests this time. refs #8673 tree | commitdiff
2016-03-14 Peter AmstutzFix cwl-runner tests. refs #8673 tree | commitdiff
2016-03-14 Peter AmstutzMerge branch '8673-cwl-runner-project-uuid' closes... tree | commitdiff
2016-03-11 Peter Amstutz8654: Collect output files into output collection,... tree | commitdiff
2016-03-11 Peter AmstutzMerge branch '8673-cwl-runner-project-uuid' into 8654... tree | commitdiff
2016-03-11 Peter Amstutz8654: Passes in local testing. tree | commitdiff
2016-03-11 Peter Amstutz8673: Fix --project-uuid for arv-keepdocker upload. tree | commitdiff
2016-03-11 Tom Clegg8491: Merge branch 'master' into 8491-import-build... tree | commitdiff
2016-03-11 Tom CleggAdd 'build/' from commit '555b039609a3c8700c27767c255fd... tree | commitdiff
2016-03-11 Peter Amstutz8673: Report pipeline instance uuid. Reuse jobs by... tree | commitdiff
2016-03-11 radhikacloses #8558 tree | commitdiff
2016-03-11 radhikaMerge branch 'master' into 8558-cwl-propagate-resource-req tree | commitdiff
2016-03-11 Peter Amstutz8673: Typo fix for --project-uuid. Refactor main loop... tree | commitdiff
2016-03-10 radhika8558: when cores not found in resources, use default. tree | commitdiff
2016-03-10 Peter Amstutz8673: Adding --project-uuid so resources are created... tree | commitdiff
2016-03-10 radhika8558: compacted code tree | commitdiff
2016-03-09 Peter Amstutz8636: Fix ArvPathMapper.reversemap to return a tuple... tree | commitdiff
2016-03-09 radhika8558: update field names and ensure the tests pass tree | commitdiff
2016-03-09 radhikacloses #8508 tree | commitdiff
2016-03-08 Peter Amstutz8558: Add test case for running ArvadosCommandTool tree | commitdiff
2016-03-04 radhika8558: include min_scratch_mb_per_node in the keys propa... tree | commitdiff
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