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Merge branch '9570-cwl-v1.0' closes #9570
[arvados.git] / sdk / cwl /
2016-07-13 Peter AmstutzMerge branch '9570-cwl-v1.0' closes #9570 tree | commitdiff
2016-07-13 Peter Amstutz9570: Set docker_outdir consistently. tree | commitdiff
2016-07-13 Peter Amstutz9570: Update version pin and add reminder to setup... tree | commitdiff
2016-07-13 Peter Amstutz9570: Fix secondaryFile staging to ensure that all... tree | commitdiff
2016-07-12 Peter Amstutz9570: Fix for Pathmapper API change. Most tests pass... tree | commitdiff
2016-07-12 Peter Amstutz9570: Support Directory and file literal features.... tree | commitdiff
2016-07-11 Peter Amstutz9570: Pass tests except related to directory features tree | commitdiff
2016-07-11 Peter Amstutz9570: CWL v1.0 support wip tree | commitdiff
2016-07-07 Tom Clegg9567: Avoid ruamel.yaml >0.11.11. refs #9567 tree | commitdiff
2016-07-07 Tom CleggRevert "Bump cwltool dependency. Previously pinned... tree | commitdiff
2016-07-07 Tom CleggBump cwltool dependency. Previously pinned version... tree | commitdiff
2016-06-30 Peter AmstutzUpdate arvados-cwl-runner cwltool pin to get ruamel... tree | commitdiff
2016-06-29 Peter AmstutzMerge branch '9511-cwl-type-checking' closes #9511 tree | commitdiff
2016-06-29 Peter Amstutz9511: Bump cwltool dependency to get bugfix (81ff56f239... tree | commitdiff
2016-06-28 Peter AmstutzMerge branch '9442-cwl-runtime-outdir' closes #9442 tree | commitdiff
2016-06-28 Peter Amstutz9442: Incorporate check for correct $(runtime.outdir... tree | commitdiff
2016-06-28 Peter Amstutz9442: Fix runtime.outdir for containers. tree | commitdiff
2016-06-28 Peter Amstutz9442: Override kwargs["outdir"] so that $(runtime.outdi... tree | commitdiff
2016-06-27 Lucas Di PentimaMerge branch '9446-refactor-keep-parallel-write-strategy' tree | commitdiff
2016-06-22 Peter AmstutzMerge branch 'origin-8442-cwl-crunch2' closes #8442 tree | commitdiff
2016-06-22 Peter AmstutzMerge branch 'master' into origin-8442-cwl-crunch2 tree | commitdiff
2016-06-22 Peter Amstutz8442: Code cleanup. Remove dead code. Update comments. tree | commitdiff
2016-06-21 Peter Amstutz8442: Fix error reporting on missing Docker image tree | commitdiff
2016-06-21 Peter Amstutz8442: Make work_api parameter to ArvCwlRunner construct... tree | commitdiff
2016-06-21 Peter Amstutz8442: Bugfixes from end-to-end testing. tree | commitdiff
2016-06-21 Peter Amstutz8442: Fix tests. Update comments. Rename jobs ->... tree | commitdiff
2016-06-20 Peter Amstutz8442: Rename --crunch1 and --crunch2 options to --api... tree | commitdiff
2016-06-15 Peter Amstutz8442: Generatefiles encode utf-8 tree | commitdiff
2016-06-15 Peter Amstutz8442: Submit CommandLineTool containers directly withou... tree | commitdiff
2016-06-15 Peter Amstutz8442: Tweak internal handling of keep: paths, examine... tree | commitdiff
2016-06-15 Peter Amstutz8442: more import fixups, import workflow file correctly. tree | commitdiff
2016-06-15 Peter Amstutz8442: import fixups tree | commitdiff
2016-06-15 Peter Amstutz8442: Debugging container --submit with crunch2 tree | commitdiff
2016-06-15 Peter Amstutz8442: Adding --submit support with --crunch2. General... tree | commitdiff
2016-06-15 Peter Amstutz8442: Fix message tree | commitdiff
2016-06-15 Peter Amstutz8442: raise UnsupportedRequirement for unsupported... tree | commitdiff
2016-06-15 Peter Amstutz8442: Setting up mount points works. Capturing output... tree | commitdiff
2016-06-15 Peter Amstutz8442: Return PDH for Docker container. Working on... tree | commitdiff
2016-06-15 Peter Amstutz8442: Submit containers Work in progess. tree | commitdiff
2016-06-15 Peter Amstutz8442: Add --crunch1/--crunch2 switch tree | commitdiff
2016-06-15 Peter Amstutz8442: CWL create crunch2 containers WIP tree | commitdiff
2016-06-08 radhikaMerge branch 'master' into 8650-container-work-unit tree | commitdiff
2016-06-08 radhikaMerge branch 'master' into wtsi-hgi-8087-arv-cli-reques... tree | commitdiff
2016-06-08 radhikaMerge branch '8087-arv-cli-request-body-from-file'... tree | commitdiff
2016-06-07 radhikaMerge branch 'master' into 9318-dashboard-uses-work... tree | commitdiff
2016-06-07 radhikacloses #8876 tree | commitdiff
2016-06-07 Peter AmstutzBugfix submitting cwl jobs with arvados-cwl-runner... tree | commitdiff
2016-06-07 Peter AmstutzMerge branch '9275-cwl-runner-creates-jobs' closes... tree | commitdiff
2016-06-07 Peter Amstutz9275: Initial pipeline/job component update from response tree | commitdiff
2016-06-07 radhika9275: Update the update_pipeline_component method to... tree | commitdiff
2016-06-06 radhika9275: add record to cwl_runner_job as components tree | commitdiff
2016-06-06 Peter AmstutzMerge branch 'master' into 9187-crunchv2-dispatching tree | commitdiff
2016-06-03 radhika9275: create pipeline_instance in submit mode as well... tree | commitdiff
2016-05-31 radhikaMerge branch 'master' into 8876-work-unit tree | commitdiff
2016-05-31 Brett Smith9316: Include documentation in CWL SDK. tree | commitdiff
2016-05-20 Tom CleggMerge branch 'wtsi-hgi-9231-rename-redunancy-to-replica... tree | commitdiff
2016-05-19 Peter AmstutzMerge branch '8653-cwl-runner-handle-files' closes... tree | commitdiff
2016-05-19 Peter Amstutz8653: Fix tests. tree | commitdiff
2016-05-19 Peter Amstutz8653: Use load_tool.fetch_document() instead of Loader... tree | commitdiff
2016-05-19 Peter Amstutz8653: add cwlVersion so file validate correctly. tree | commitdiff
2016-05-19 Peter Amstutz8653: Fix pathmapper API tree | commitdiff
2016-05-19 Peter Amstutz8653: Set basedir for CollectionFsAccess tree | commitdiff
2016-05-18 Peter Amstutz8653: cwl-runner crunch script rewrites keep file paths... tree | commitdiff
2016-05-03 Peter AmstutzMerge branch '8998-optimize-decode-www-form-component... tree | commitdiff
2016-05-02 Tom CleggMerge branch '8653-cwl-to-template' tree | commitdiff
2016-05-02 Tom Clegg8653: Add arvados-cwl-runner --create-template flag tree | commitdiff
2016-05-02 Tom Clegg8653: DRY testing code. tree | commitdiff
2016-05-02 Tom Clegg8653: Turn off debug messages / verbose logging in... tree | commitdiff
2016-05-02 Tom Clegg8653: Fix whitespace. tree | commitdiff
2016-04-26 Peter AmstutzMerge branch '8931-event-thread-catch-exceptions' close... tree | commitdiff
2016-04-21 radhikacloses #8936 tree | commitdiff
2016-04-21 Peter AmstutzPin bump cwltool dependency and pin version so it doesn... tree | commitdiff
2016-04-12 radhikaMerge branch 'master' into 8724-keep-block-check-script tree | commitdiff
2016-04-11 Peter AmstutzAdd --help to test_with_arvbox.sh, no issue # tree | commitdiff
2016-04-10 Peter AmstutzMerge branch '8799-make-drained-nodes-idle' closes... tree | commitdiff
2016-04-07 radhikaMerge branch 'master' into 7658-websockets-reconnect... tree | commitdiff
2016-04-06 Brett SmithMerge branch '8879-cwl-runner-job-owner-wip' tree | commitdiff
2016-04-06 Brett Smith8879: Clean indentation in CWL SDK tests. tree | commitdiff
2016-04-06 Brett Smith8879: cwl-runner --submit respects --project-uuid. tree | commitdiff
2016-04-01 Peter AmstutzMerge branch '8816-compute-node-update-exception' close... tree | commitdiff
2016-04-01 Brett SmithMerge branch '8782-reapchildren-after-signal-wip' tree | commitdiff
2016-04-01 Peter AmstutzMerge branch '8857-cwl-job-reuse' closes #8857 tree | commitdiff
2016-04-01 Peter AmstutzMerge branch 'master' into 8857-cwl-job-reuse tree | commitdiff
2016-03-31 Peter AmstutzMerge branch '8840-lock-job-record' closes #8840 tree | commitdiff
2016-03-31 Peter AmstutzMerge branch '8654-arv-jobs-cwl-runner' closes #8654 tree | commitdiff
2016-03-31 Peter Amstutz8654: Update test because input cwl files changed. tree | commitdiff
2016-03-31 Peter Amstutz8654: Fix versionstring(). Improve help text / comment... tree | commitdiff
2016-03-31 Peter AmstutzMerge branch 'master' into 8654-arv-jobs-cwl-runner tree | commitdiff
2016-03-31 Peter Amstutz8654: Rename tests/inp/ to test/input/ tree | commitdiff
2016-03-31 Peter Amstutz8857: Add --ignore-docker-for-reuse option to assist... tree | commitdiff
2016-03-30 Peter Amstutz8654: Add missing test_submit tree | commitdiff
2016-03-30 Peter Amstutz8654: Add comments tree | commitdiff
2016-03-30 Peter Amstutz8654: Print uuid of uploaded docker image on stderr... tree | commitdiff
2016-03-30 radhikaMerge branch 'master' into 8703-job-components tree | commitdiff
2016-03-30 Peter Amstutz8654: Update test_with_arvbox.sh tree | commitdiff
2016-03-29 Peter Amstutz8654: Fix version string produced by arvados-cwl-runner. tree | commitdiff
2016-03-29 Peter AmstutzFix sdk/cwl test refs #8815 tree | commitdiff
2016-03-29 Peter AmstutzMerge branch '8815-crunchrunner-everywhere' closes... tree | commitdiff
2016-03-29 Peter AmstutzMerge branch '8815-crunchrunner-everywhere' into 8654... tree | commitdiff
2016-03-29 Peter Amstutz8654: Make --submit --wait the default mode. tree | commitdiff
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