From: Alex Coleman Date: Mon, 31 Jul 2023 19:06:06 +0000 (-0600) Subject: 20497/17846 Updating WGS tutorial for based on roadbumps. X-Git-Tag: 2.7.0~7^2~9 X-Git-Url: https://git.arvados.org/arvados.git/commitdiff_plain/bbd42ba4d776f89a45df35c6c453d061f92857eb 20497/17846 Updating WGS tutorial for based on roadbumps. Arvados-DCO-1.1-Signed-off-by: Alex Coleman --- diff --git a/doc/user/tutorials/wgs-tutorial.html.textile.liquid b/doc/user/tutorials/wgs-tutorial.html.textile.liquid index ba5a6b95ad..c33c2106a0 100644 --- a/doc/user/tutorials/wgs-tutorial.html.textile.liquid +++ b/doc/user/tutorials/wgs-tutorial.html.textile.liquid @@ -114,10 +114,9 @@ We have already previously registered the WGS workflow and set default input val Let’s find the registered WGS Processing Workflow and run it interactively in our newly created project. -# To find the registered workflow, you can search for it in the search box located in the top right corner of the Arvados Workbench by looking for the name “WGS Processing Workflow”. +# To find the registered workflow, you can search for it in the search box located in the top right corner of the Arvados Workbench by looking for the name "WGS processing workflow scattered over samples". # Once you have found the registered workflow, you can run it your project by using the Run Workflow button and selecting your project ("WGS Processing Tutorial") that you set up in Section 3a, under *Project where the workflow will be done*. # Default inputs to the registered workflow will be automatically filled in. These inputs will still work. You can verify this by checking the addresses of the collections you copied over to your New Project. -# The input *Directory of paired FASTQ files* will need to be set. Click the box, select "PGP UK FASTQs" under the *Choose a directory* dialog, then click OK. # Now, you can submit your workflow by scrolling to the bottom of the page and hitting the Run button. Congratulations! You have now submitted your workflow to run. You can move to Section 5 to learn how to check the state of your submitted workflow and Section 6 to learn how to examine the results of and logs from your workflow.