From: Peter Amstutz <peter.amstutz@curii.com>
Date: Wed, 14 Jul 2021 20:39:02 +0000 (-0400)
Subject: 17816: Make singularity-in-arvbox work
X-Git-Tag: 2.3.0~143^2~5
X-Git-Url: https://git.arvados.org/arvados.git/commitdiff_plain/879bde382ebf26aa593869cfff22cc7e85be6bb0

17816: Make singularity-in-arvbox work

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---

diff --git a/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run b/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run
deleted file mode 120000
index a388c8b67b..0000000000
--- a/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run
+++ /dev/null
@@ -1 +0,0 @@
-/usr/local/lib/arvbox/runsu.sh
\ No newline at end of file
diff --git a/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run b/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run
new file mode 100755
index 0000000000..821afdce50
--- /dev/null
+++ b/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run
@@ -0,0 +1,30 @@
+#!/bin/bash
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
+exec 2>&1
+set -ex -o pipefail
+
+. /usr/local/lib/arvbox/common.sh
+. /usr/local/lib/arvbox/go-setup.sh
+
+flock /var/lib/gopath/gopath.lock go install "git.arvados.org/arvados.git/services/crunch-dispatch-local"
+install $GOPATH/bin/crunch-dispatch-local /usr/local/bin
+ln -sf arvados-server /usr/local/bin/crunch-run
+
+if test "$1" = "--only-deps" ; then
+    exit
+fi
+
+cat > /usr/local/bin/crunch-run.sh <<EOF
+#!/bin/sh
+exec /usr/local/bin/crunch-run -container-enable-networking=default -container-network-mode=host \$@
+EOF
+chmod +x /usr/local/bin/crunch-run.sh
+
+export ARVADOS_API_HOST=$localip:${services[controller-ssl]}
+export ARVADOS_API_HOST_INSECURE=1
+export ARVADOS_API_TOKEN=$(cat $ARVADOS_CONTAINER_PATH/superuser_token)
+
+exec /usr/local/bin/crunch-dispatch-local -crunch-run-command=/usr/local/bin/crunch-run.sh -poll-interval=1
diff --git a/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run-service b/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run-service
deleted file mode 100755
index 821afdce50..0000000000
--- a/tools/arvbox/lib/arvbox/docker/service/crunch-dispatch-local/run-service
+++ /dev/null
@@ -1,30 +0,0 @@
-#!/bin/bash
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: AGPL-3.0
-
-exec 2>&1
-set -ex -o pipefail
-
-. /usr/local/lib/arvbox/common.sh
-. /usr/local/lib/arvbox/go-setup.sh
-
-flock /var/lib/gopath/gopath.lock go install "git.arvados.org/arvados.git/services/crunch-dispatch-local"
-install $GOPATH/bin/crunch-dispatch-local /usr/local/bin
-ln -sf arvados-server /usr/local/bin/crunch-run
-
-if test "$1" = "--only-deps" ; then
-    exit
-fi
-
-cat > /usr/local/bin/crunch-run.sh <<EOF
-#!/bin/sh
-exec /usr/local/bin/crunch-run -container-enable-networking=default -container-network-mode=host \$@
-EOF
-chmod +x /usr/local/bin/crunch-run.sh
-
-export ARVADOS_API_HOST=$localip:${services[controller-ssl]}
-export ARVADOS_API_HOST_INSECURE=1
-export ARVADOS_API_TOKEN=$(cat $ARVADOS_CONTAINER_PATH/superuser_token)
-
-exec /usr/local/bin/crunch-dispatch-local -crunch-run-command=/usr/local/bin/crunch-run.sh -poll-interval=1
diff --git a/tools/arvbox/lib/arvbox/docker/service/ready/run-service b/tools/arvbox/lib/arvbox/docker/service/ready/run-service
index b29dafed70..f49e9ea26f 100755
--- a/tools/arvbox/lib/arvbox/docker/service/ready/run-service
+++ b/tools/arvbox/lib/arvbox/docker/service/ready/run-service
@@ -41,7 +41,7 @@ for sdk_app in arv arv-get cwl-runner arv-mount ; do
     fi
 done
 
-if ! (ps x | grep -v grep | grep "crunch-dispatch") > /dev/null ; then
+if ! (ps ax | grep -v grep | grep "crunch-dispatch") > /dev/null ; then
     waiting="$waiting crunch-dispatch"
 fi