X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/ff30b2754f2517fff513f766398ec04eac14c11c..280621308e41e9cc8b8557d27738f186e795780b:/services/crunch-run/crunchrun_test.go diff --git a/services/crunch-run/crunchrun_test.go b/services/crunch-run/crunchrun_test.go index 9880230ce8..fd9f0cba75 100644 --- a/services/crunch-run/crunchrun_test.go +++ b/services/crunch-run/crunchrun_test.go @@ -14,9 +14,9 @@ import ( . "gopkg.in/check.v1" "io" "io/ioutil" - "log" "os" "os/exec" + "path/filepath" "sort" "strings" "sync" @@ -57,6 +57,9 @@ var hwImageId = "9c31ee32b3d15268a0754e8edc74d4f815ee014b693bc5109058e431dd5caea var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n" var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54" +var subdirManifest = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6411234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 27:5649:qr1hi-8i9sb-6tjg516fx3dhvnk.log.txt\n./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt\n./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6415544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:19:file2_in_subdir2.txt\n" +var subdirPDH = "a0def87f80dd594d4675809e83bd4f15+367" + var fakeAuthUUID = "zzzzz-gj3su-55pqoyepgi2glem" var fakeAuthToken = "a3ltuwzqcu2u4sc0q7yhpc2w7s00fdcqecg5d6e0u3pfohmbjt" @@ -69,6 +72,7 @@ type TestDockerClient struct { stop chan bool cwd string env []string + api *ArvTestClient } func NewTestDockerClient() *TestDockerClient { @@ -139,7 +143,7 @@ func (client *ArvTestClient) Create(resourceType string, client.Mutex.Lock() defer client.Mutex.Unlock() - client.Calls += 1 + client.Calls++ client.Content = append(client.Content, parameters) if resourceType == "logs" { @@ -181,6 +185,8 @@ func (client *ArvTestClient) Get(resourceType string, uuid string, parameters ar output.(*arvados.Collection).ManifestText = hwManifest } else if uuid == otherPDH { output.(*arvados.Collection).ManifestText = otherManifest + } else if uuid == subdirPDH { + output.(*arvados.Collection).ManifestText = subdirManifest } } if resourceType == "containers" { @@ -192,7 +198,7 @@ func (client *ArvTestClient) Get(resourceType string, uuid string, parameters ar func (client *ArvTestClient) Update(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) (err error) { client.Mutex.Lock() defer client.Mutex.Unlock() - client.Calls += 1 + client.Calls++ client.Content = append(client.Content, parameters) if resourceType == "containers" { if parameters["container"].(arvadosclient.Dict)["state"] == "Running" { @@ -202,11 +208,17 @@ func (client *ArvTestClient) Update(resourceType string, uuid string, parameters return nil } +var discoveryMap = map[string]interface{}{"defaultTrashLifetime": float64(1209600)} + +func (client *ArvTestClient) Discovery(key string) (interface{}, error) { + return discoveryMap[key], nil +} + // CalledWith returns the parameters from the first API call whose // parameters match jpath/string. E.g., CalledWith(c, "foo.bar", // "baz") returns parameters with parameters["foo"]["bar"]=="baz". If // no call matches, it returns nil. -func (client *ArvTestClient) CalledWith(jpath, expect string) arvadosclient.Dict { +func (client *ArvTestClient) CalledWith(jpath string, expect interface{}) arvadosclient.Dict { call: for _, content := range client.Content { var v interface{} = content @@ -217,7 +229,7 @@ call: v = dict[k] } } - if v, ok := v.(string); ok && v == expect { + if v == expect { return content } } @@ -307,6 +319,10 @@ func (ArvErrorTestClient) Update(resourceType string, uuid string, parameters ar return nil } +func (ArvErrorTestClient) Discovery(key string) (interface{}, error) { + return discoveryMap[key], nil +} + type KeepErrorTestClient struct{} func (KeepErrorTestClient) PutHB(hash string, buf []byte) (string, int, error) { @@ -507,7 +523,7 @@ func (s *TestSuite) TestUpdateContainerCancelled(c *C) { // Used by the TestFullRun*() test below to DRY up boilerplate setup to do full // dress rehearsal of the Run() function, starting from a JSON container record. -func FullRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner) { +func FullRunHelper(c *C, record string, extraMounts []string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner) { rec := arvados.Container{} err := json.Unmarshal([]byte(record), &rec) c.Check(err, IsNil) @@ -517,10 +533,21 @@ func FullRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvT docker.RemoveImage(hwImageId, true) api = &ArvTestClient{Container: rec} + docker.api = api cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz") + cr.statInterval = 100 * time.Millisecond am := &ArvMountCmdLine{} cr.RunArvMount = am.ArvMountTest + if extraMounts != nil && len(extraMounts) > 0 { + err := cr.SetupArvMountPoint("keep") + c.Check(err, IsNil) + + for _, m := range extraMounts { + os.MkdirAll(cr.ArvMountPoint+"/by_id/"+m, os.ModePerm) + } + } + err = cr.Run() c.Check(err, IsNil) c.Check(api.WasSetRunning, Equals, true) @@ -547,20 +574,51 @@ func (s *TestSuite) TestFullRunHello(c *C) { "output_path": "/tmp", "priority": 1, "runtime_constraints": {} -}`, func(t *TestDockerClient) { +}`, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, "hello world\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{} }) - c.Check(api.Calls, Equals, 7) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") - + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "hello world\n"), Equals, true) } +func (s *TestSuite) TestCrunchstat(c *C) { + api, _ := FullRunHelper(c, `{ + "command": ["sleep", "1"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": ".", + "environment": {}, + "mounts": {"/tmp": {"kind": "tmp"} }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }`, nil, func(t *TestDockerClient) { + time.Sleep(time.Second) + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + + // We didn't actually start a container, so crunchstat didn't + // find accounting files and therefore didn't log any stats. + // It should have logged a "can't find accounting files" + // message after one poll interval, though, so we can confirm + // it's alive: + c.Assert(api.Logs["crunchstat"], NotNil) + c.Check(api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files have not appeared after 100ms.*`) + + // The "files never appeared" log assures us that we called + // (*crunchstat.Reporter)Stop(), and that we set it up with + // the correct container ID "abcde": + c.Check(api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files never appeared for abcde\n`) +} + func (s *TestSuite) TestFullRunStderr(c *C) { api, _ := FullRunHelper(c, `{ "command": ["/bin/sh", "-c", "echo hello ; echo world 1>&2 ; exit 1"], @@ -571,17 +629,17 @@ func (s *TestSuite) TestFullRunStderr(c *C) { "output_path": "/tmp", "priority": 1, "runtime_constraints": {} -}`, func(t *TestDockerClient) { +}`, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, "hello\n")) t.logWriter.Write(dockerLog(2, "world\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{ExitCode: 1} }) - c.Assert(api.Calls, Equals, 8) - c.Check(api.Content[7]["container"].(arvadosclient.Dict)["log"], NotNil) - c.Check(api.Content[7]["container"].(arvadosclient.Dict)["exit_code"], Equals, 1) - c.Check(api.Content[7]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") + final := api.CalledWith("container.state", "Complete") + c.Assert(final, NotNil) + c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1) + c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "hello\n"), Equals, true) c.Check(strings.HasSuffix(api.Logs["stderr"].String(), "world\n"), Equals, true) @@ -597,18 +655,15 @@ func (s *TestSuite) TestFullRunDefaultCwd(c *C) { "output_path": "/tmp", "priority": 1, "runtime_constraints": {} -}`, func(t *TestDockerClient) { +}`, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, t.cwd+"\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{ExitCode: 0} }) - c.Check(api.Calls, Equals, 7) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") - - log.Print(api.Logs["stdout"].String()) - + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + c.Log(api.Logs["stdout"]) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "/\n"), Equals, true) } @@ -622,16 +677,14 @@ func (s *TestSuite) TestFullRunSetCwd(c *C) { "output_path": "/tmp", "priority": 1, "runtime_constraints": {} -}`, func(t *TestDockerClient) { +}`, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, t.cwd+"\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{ExitCode: 0} }) - c.Check(api.Calls, Equals, 7) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") - + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "/bin\n"), Equals, true) } @@ -682,9 +735,8 @@ func (s *TestSuite) TestCancel(c *C) { } } - c.Assert(api.Calls, Equals, 6) - c.Check(api.Content[5]["container"].(arvadosclient.Dict)["log"], IsNil) - c.Check(api.Content[5]["container"].(arvadosclient.Dict)["state"], Equals, "Cancelled") + c.Check(api.CalledWith("container.log", nil), NotNil) + c.Check(api.CalledWith("container.state", "Cancelled"), NotNil) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "foo\n"), Equals, true) } @@ -699,16 +751,14 @@ func (s *TestSuite) TestFullRunSetEnv(c *C) { "output_path": "/tmp", "priority": 1, "runtime_constraints": {} -}`, func(t *TestDockerClient) { +}`, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{ExitCode: 0} }) - c.Check(api.Calls, Equals, 7) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0) - c.Check(api.Content[6]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") - + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "bilbo\n"), Equals, true) } @@ -723,6 +773,14 @@ func (am *ArvMountCmdLine) ArvMountTest(c []string, token string) (*exec.Cmd, er return nil, nil } +func stubCert(temp string) string { + path := temp + "/ca-certificates.crt" + crt, _ := os.Create(path) + crt.Close() + arvadosclient.CertFiles = []string{path} + return path +} + func (s *TestSuite) TestSetupMounts(c *C) { api := &ArvTestClient{} kc := &KeepTestClient{} @@ -730,84 +788,236 @@ func (s *TestSuite) TestSetupMounts(c *C) { am := &ArvMountCmdLine{} cr.RunArvMount = am.ArvMountTest + realTemp, err := ioutil.TempDir("", "crunchrun_test1-") + c.Assert(err, IsNil) + certTemp, err := ioutil.TempDir("", "crunchrun_test2-") + c.Assert(err, IsNil) + stubCertPath := stubCert(certTemp) + + defer os.RemoveAll(realTemp) + defer os.RemoveAll(certTemp) + i := 0 - cr.MkTempDir = func(string, string) (string, error) { - i += 1 - d := fmt.Sprintf("/tmp/mktmpdir%d", i) - os.Mkdir(d, os.ModePerm) - return d, nil + cr.MkTempDir = func(_ string, prefix string) (string, error) { + i++ + d := fmt.Sprintf("%s/%s%d", realTemp, prefix, i) + err := os.Mkdir(d, os.ModePerm) + if err != nil && strings.Contains(err.Error(), ": file exists") { + // Test case must have pre-populated the tempdir + err = nil + } + return d, err + } + + checkEmpty := func() { + filepath.Walk(realTemp, func(path string, _ os.FileInfo, err error) error { + c.Check(path, Equals, realTemp) + c.Check(err, IsNil) + return nil + }) } { + i = 0 + cr.ArvMountPoint = "" cr.Container.Mounts = make(map[string]arvados.Mount) cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"} cr.OutputPath = "/tmp" err := cr.SetupMounts() c.Check(err, IsNil) - c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"}) - c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir2:/tmp"}) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp"}) cr.CleanupDirs() + checkEmpty() } { i = 0 + cr.ArvMountPoint = "" cr.Container.Mounts = make(map[string]arvados.Mount) - cr.Container.Mounts["/keeptmp"] = arvados.Mount{Kind: "collection", Writable: true} + cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"} + cr.OutputPath = "/tmp" + + apiflag := true + cr.Container.RuntimeConstraints.API = &apiflag + + err := cr.SetupMounts() + c.Check(err, IsNil) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", stubCertPath + ":/etc/arvados/ca-certificates.crt:ro"}) + cr.CleanupDirs() + checkEmpty() + + apiflag = false + } + + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = map[string]arvados.Mount{ + "/keeptmp": {Kind: "collection", Writable: true}, + } cr.OutputPath = "/keeptmp" - os.MkdirAll("/tmp/mktmpdir1/tmp0", os.ModePerm) + os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm) err := cr.SetupMounts() c.Check(err, IsNil) - c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"}) - c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir1/tmp0:/keeptmp"}) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/tmp0:/keeptmp"}) cr.CleanupDirs() + checkEmpty() } { i = 0 - cr.Container.Mounts = make(map[string]arvados.Mount) - cr.Container.Mounts["/keepinp"] = arvados.Mount{Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"} - cr.Container.Mounts["/keepout"] = arvados.Mount{Kind: "collection", Writable: true} + cr.ArvMountPoint = "" + cr.Container.Mounts = map[string]arvados.Mount{ + "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"}, + "/keepout": {Kind: "collection", Writable: true}, + } + cr.OutputPath = "/keepout" + + os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm) + os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm) + + err := cr.SetupMounts() + c.Check(err, IsNil) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + sort.StringSlice(cr.Binds).Sort() + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro", + realTemp + "/keep1/tmp0:/keepout"}) + cr.CleanupDirs() + checkEmpty() + } + + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.RuntimeConstraints.KeepCacheRAM = 512 + cr.Container.Mounts = map[string]arvados.Mount{ + "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"}, + "/keepout": {Kind: "collection", Writable: true}, + } cr.OutputPath = "/keepout" - os.MkdirAll("/tmp/mktmpdir1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm) - os.MkdirAll("/tmp/mktmpdir1/tmp0", os.ModePerm) + os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm) + os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm) err := cr.SetupMounts() c.Check(err, IsNil) - c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "/tmp/mktmpdir1"}) - var ss sort.StringSlice = cr.Binds - ss.Sort() - c.Check(cr.Binds, DeepEquals, []string{"/tmp/mktmpdir1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro", - "/tmp/mktmpdir1/tmp0:/keepout"}) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + sort.StringSlice(cr.Binds).Sort() + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro", + realTemp + "/keep1/tmp0:/keepout"}) cr.CleanupDirs() + checkEmpty() + } + + for _, test := range []struct { + in interface{} + out string + }{ + {in: "foo", out: `"foo"`}, + {in: nil, out: `null`}, + {in: map[string]int{"foo": 123}, out: `{"foo":123}`}, + } { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = map[string]arvados.Mount{ + "/mnt/test.json": {Kind: "json", Content: test.in}, + } + err := cr.SetupMounts() + c.Check(err, IsNil) + sort.StringSlice(cr.Binds).Sort() + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2/mountdata.json:/mnt/test.json:ro"}) + content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json") + c.Check(err, IsNil) + c.Check(content, DeepEquals, []byte(test.out)) + cr.CleanupDirs() + checkEmpty() + } + + // Read-only mount points are allowed underneath output_dir mount point + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = make(map[string]arvados.Mount) + cr.Container.Mounts = map[string]arvados.Mount{ + "/tmp": {Kind: "tmp"}, + "/tmp/foo": {Kind: "collection"}, + } + cr.OutputPath = "/tmp" + + os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm) + + err := cr.SetupMounts() + c.Check(err, IsNil) + c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"}) + c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"}) + cr.CleanupDirs() + checkEmpty() + } + + // Writable mount points are not allowed underneath output_dir mount point + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = make(map[string]arvados.Mount) + cr.Container.Mounts = map[string]arvados.Mount{ + "/tmp": {Kind: "tmp"}, + "/tmp/foo": {Kind: "collection", Writable: true}, + } + cr.OutputPath = "/tmp" + + err := cr.SetupMounts() + c.Check(err, NotNil) + c.Check(err, ErrorMatches, `Writable mount points are not permitted underneath the output_path.*`) + cr.CleanupDirs() + checkEmpty() + } + + // Only mount points of kind 'collection' are allowed underneath output_dir mount point + { + i = 0 + cr.ArvMountPoint = "" + cr.Container.Mounts = make(map[string]arvados.Mount) + cr.Container.Mounts = map[string]arvados.Mount{ + "/tmp": {Kind: "tmp"}, + "/tmp/foo": {Kind: "json"}, + } + cr.OutputPath = "/tmp" + + err := cr.SetupMounts() + c.Check(err, NotNil) + c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`) + cr.CleanupDirs() + checkEmpty() } } func (s *TestSuite) TestStdout(c *C) { - helperRecord := `{` - helperRecord += `"command": ["/bin/sh", "-c", "echo $FROBIZ"],` - helperRecord += `"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",` - helperRecord += `"cwd": "/bin",` - helperRecord += `"environment": {"FROBIZ": "bilbo"},` - helperRecord += `"mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} },` - helperRecord += `"output_path": "/tmp",` - helperRecord += `"priority": 1,` - helperRecord += `"runtime_constraints": {}` - helperRecord += `}` - - api, _ := FullRunHelper(c, helperRecord, func(t *TestDockerClient) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + api, _ := FullRunHelper(c, helperRecord, nil, func(t *TestDockerClient) { t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) t.logWriter.Close() t.finish <- dockerclient.WaitResult{ExitCode: 0} }) - c.Assert(api.Calls, Equals, 6) - c.Check(api.Content[5]["container"].(arvadosclient.Dict)["exit_code"], Equals, 0) - c.Check(api.Content[5]["container"].(arvadosclient.Dict)["state"], Equals, "Complete") - c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), Not(IsNil)) + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil) } // Used by the TestStdoutWithWrongPath*() @@ -858,3 +1068,170 @@ func (s *TestSuite) TestStdoutWithWrongKindCollection(c *C) { c.Check(err, NotNil) c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'collection' for stdout"), Equals, true) } + +func (s *TestSuite) TestFullRunWithAPI(c *C) { + os.Setenv("ARVADOS_API_HOST", "test.arvados.org") + defer os.Unsetenv("ARVADOS_API_HOST") + api, _ := FullRunHelper(c, `{ + "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {}, + "mounts": {"/tmp": {"kind": "tmp"} }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {"API": true} +}`, nil, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, t.env[1][17:]+"\n")) + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{ExitCode: 0} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "test.arvados.org\n"), Equals, true) + c.Check(api.CalledWith("container.output", "d41d8cd98f00b204e9800998ecf8427e+0"), NotNil) +} + +func (s *TestSuite) TestFullRunSetOutput(c *C) { + os.Setenv("ARVADOS_API_HOST", "test.arvados.org") + defer os.Unsetenv("ARVADOS_API_HOST") + api, _ := FullRunHelper(c, `{ + "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {}, + "mounts": {"/tmp": {"kind": "tmp"} }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {"API": true} +}`, nil, func(t *TestDockerClient) { + t.api.Container.Output = "d4ab34d3d4f8a72f5c4973051ae69fab+122" + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{ExitCode: 0} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + c.Check(api.CalledWith("container.output", "d4ab34d3d4f8a72f5c4973051ae69fab+122"), NotNil) +} + +func (s *TestSuite) TestStdoutWithExcludeFromOutputMountPointUnderOutputDir(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"}, + "/tmp/foo": {"kind": "collection", + "portable_data_hash": "a3e8f74c6f101eae01fa08bfb4e49b3a+54", + "content": {"exclude_from_output": true} + }, + "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + extraMounts := []string{"a3e8f74c6f101eae01fa08bfb4e49b3a+54"} + + api, _ := FullRunHelper(c, helperRecord, extraMounts, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{ExitCode: 0} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil) +} + +func (s *TestSuite) TestStdoutWithMountPointForFileUnderOutputDir(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"}, + "/tmp/foo": {"kind": "collection", "portable_data_hash": "a3e8f74c6f101eae01fa08bfb4e49b3a+54/md5sum.txt"}, + "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + extraMounts := []string{"a3e8f74c6f101eae01fa08bfb4e49b3a+54/md5sum.txt"} + + api, _ := FullRunHelper(c, helperRecord, extraMounts, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{ExitCode: 0} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + for _, v := range api.Content { + if v["collection"] != nil { + collection := v["collection"].(arvadosclient.Dict) + if strings.Index(collection["name"].(string), "output") == 0 { + streams := strings.Split(collection["manifest_text"].(string), "\n") + c.Check(streams[0], Equals, "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out") + c.Check(streams[1], Equals, ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:foo") + } + } + } +} + +func (s *TestSuite) TestStdoutWithMultipleMountPointsUnderOutputDir(c *C) { + helperRecord := `{ + "command": ["/bin/sh", "-c", "echo $FROBIZ"], + "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122", + "cwd": "/bin", + "environment": {"FROBIZ": "bilbo"}, + "mounts": { + "/tmp": {"kind": "tmp"}, + "/tmp/foo": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367"}, + "/tmp/foo/sub1": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1"}, + "/tmp/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/file2_in_subdir1.txt"}, + "/tmp/foo/sub2file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/subdir2/file2_in_subdir2.txt"}, + "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} + }, + "output_path": "/tmp", + "priority": 1, + "runtime_constraints": {} + }` + + extraMounts := []string{"a0def87f80dd594d4675809e83bd4f15+367"} + + api, _ := FullRunHelper(c, helperRecord, extraMounts, func(t *TestDockerClient) { + t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n")) + t.logWriter.Close() + t.finish <- dockerclient.WaitResult{ExitCode: 0} + }) + + c.Check(api.CalledWith("container.exit_code", 0), NotNil) + c.Check(api.CalledWith("container.state", "Complete"), NotNil) + for _, v := range api.Content { + if v["collection"] != nil { + collection := v["collection"].(arvadosclient.Dict) + if strings.Index(collection["name"].(string), "output") == 0 { + manifest := collection["manifest_text"].(string) + + c.Check(-1, Not(Equals), strings.Index(manifest, "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out")) + + origManifestWithDotReplacedAsFoo := strings.Replace(subdirManifest, "./", "./foo/", -1) + c.Check(-1, Not(Equals), strings.Index(manifest, "./foo"+origManifestWithDotReplacedAsFoo[1:])) + + c.Check(-1, Not(Equals), strings.Index(manifest, "./foo/sub1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt")) + + c.Check(-1, Not(Equals), strings.Index(manifest, "./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6419876543234@569fa8c4 9:18:sub1file2")) + + c.Check(-1, Not(Equals), strings.Index(manifest, "./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0a18eda6415544332211@569fa8c5 9:19:sub2file2")) + } + } + } +}