X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/fe7f9a43e42f31c35d879aee3e0ec5f811b19abf..8d1d8930d4e6670fc0331b902397ec494f2ff86f:/doc/user/tutorials/tutorial-submit-job.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-submit-job.html.textile.liquid b/doc/user/tutorials/tutorial-submit-job.html.textile.liquid index a6edc7dd0a..b17f951e74 100644 --- a/doc/user/tutorials/tutorial-submit-job.html.textile.liquid +++ b/doc/user/tutorials/tutorial-submit-job.html.textile.liquid @@ -13,53 +13,18 @@ This tutorial uses @$USER@ to denote your username. Replace @$USER@ with your u Also, this tutorial uses the @tutorial@ arvados repository created in "Adding a new arvados repository":add-new-repository.html as the example repository. -h2. Clone arvados repository +h2. Clone Arvados repository -All Crunch scripts are managed through the Git revision control system. Before you start using Git, you should do some basic configuration (you only need to do this the first time): - - -
~$ git config --global user.name "Your Name"
-~$ git config --global user.email $USER@example.com
-
- -On the Arvados Workbench, click on the dropdown menu icon in the upper right corner of the top navigation menu to access the user settings menu, and click on the menu item *Repositories*. In the *Repositories* page, you should see the @$USER/tutorial@ repository listed in the *name* column. Next to *name* is the column *URL*. Copy the *URL* value associated with your repository. This should look like https://git.{{ site.arvados_api_host }}/$USER/tutorial.git. Alternatively, you can use git@git.{{ site.arvados_api_host }}:$USER/tutorial.git - -Next, on the Arvados virtual machine, clone your Git repository: - - -
~$ cd $HOME # (or wherever you want to install)
-~$ git clone https://git.{{ site.arvados_api_host }}/$USER/tutorial.git
-Cloning into 'tutorial'...
-
- -This will create a Git repository in the directory called @tutorial@ in your home directory. Say yes when prompted to continue with connection. -Ignore any warning that you are cloning an empty repository. - -*Note:* If you are prompted for username and password when you try to git clone using this command, you may first need to update your git configuration. Execute the following commands to update your git configuration. - - -
-~$ git config 'credential.https://git.{{ site.arvados_api_host }}/.username' none
-~$ git config 'credential.https://git.{{ site.arvados_api_host }}/.helper' '!cred(){ cat >/dev/null; if [ "$1" = get ]; then echo password=$ARVADOS_API_TOKEN; fi; };cred'
-
-
- -{% include 'notebox_begin' %} -For more information about using Git, try - -notextile.
$ man gittutorial
- -or *"search Google for Git tutorials":http://google.com/#q=git+tutorial*. -{% include 'notebox_end' %} +Please clone the *tutorial* repository using the instructions from "Working with Arvados git repository":git-arvados-guide.html, if you have not yet cloned already. h2. Creating a Crunch script -Start by entering the @tutorial@ directory created by @git clone@. Next create a subdirectory called @crunch_scripts@ and change to that directory: +Start by entering the @tutorial@ directory created by @git clone@. Next, create a subdirectory called @crunch_scripts@ and change to that directory: -
~$ cd $USER
-~/$USER$ mkdir crunch_scripts
-~/$USER$ cd crunch_scripts
+
>~$ cd tutorial
+~/tutorial$ mkdir crunch_scripts
+~/tutorial$ cd crunch_scripts
Next, using @nano@ or your favorite Unix text editor, create a new file called @hash.py@ in the @crunch_scripts@ directory. @@ -81,7 +46,7 @@ notextile.
~/tutorial/crunch_scripts$ git add
 Next, commit your changes.  All staged changes are recorded into the local git repository:
 
 
-
~/tutorial/crunch_scripts$ git commit -m"my first script"
+
~/tutorial/crunch_scripts$ git commit -m "my first script"
 [master (root-commit) 27fd88b] my first script
  1 file changed, 45 insertions(+)
  create mode 100755 crunch_scripts/hash.py