X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/fd22b368fb9d3bdfa17d5b6a65279fde8664700e..2755c8e5060fc5f84c91e089b43d5019c84cd93b:/sdk/cwl/arvados_cwl/__init__.py diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py index fe3249cc02..27af075f36 100644 --- a/sdk/cwl/arvados_cwl/__init__.py +++ b/sdk/cwl/arvados_cwl/__init__.py @@ -105,9 +105,21 @@ class ArvCwlRunner(object): def add_uploaded(self, src, pair): self.uploaded[src] = pair + def check_writable(self, obj): + if isinstance(obj, dict): + if obj.get("writable"): + raise UnsupportedRequirement("InitialWorkDir feature 'writable: true' not supported") + for v in obj.itervalues(): + self.check_writable(v) + if isinstance(obj, list): + for v in obj: + self.check_writable(v) + def arvExecutor(self, tool, job_order, **kwargs): self.debug = kwargs.get("debug") + tool.visit(self.check_writable) + if kwargs.get("quiet"): logger.setLevel(logging.WARN) logging.getLogger('arvados.arv-run').setLevel(logging.WARN) @@ -138,6 +150,7 @@ class ArvCwlRunner(object): kwargs["outdir"] = "/var/spool/cwl" kwargs["docker_outdir"] = "/var/spool/cwl" kwargs["tmpdir"] = "/tmp" + kwargs["docker_tmpdir"] = "/tmp" elif self.work_api == "jobs": kwargs["outdir"] = "$(task.outdir)" kwargs["docker_outdir"] = "$(task.outdir)"