X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/facbf48de90f600a42363b72bcb2b4929f78c73d..a1c4ece152e1e992c18f0cb368528cd2ac843b07:/doc/user/tutorials/tutorial-keep.html.textile.liquid diff --git a/doc/user/tutorials/tutorial-keep.html.textile.liquid b/doc/user/tutorials/tutorial-keep.html.textile.liquid index 0d8dfb344d..ec7086db96 100644 --- a/doc/user/tutorials/tutorial-keep.html.textile.liquid +++ b/doc/user/tutorials/tutorial-keep.html.textile.liquid @@ -3,8 +3,13 @@ layout: default navsection: userguide title: "Uploading data" ... +{% comment %} +Copyright (C) The Arvados Authors. All rights reserved. -Arvados Data collections can be uploaded using either the @*arv keep put*@ command line tool or using Workbench. +SPDX-License-Identifier: CC-BY-SA-3.0 +{% endcomment %} + +Arvados Data collections can be uploaded using either the @arv-put@ command line tool or using Workbench. # "*Upload using command line tool*":#upload-using-command # "*Upload using Workbench*":#upload-using-workbench @@ -15,42 +20,43 @@ h2(#upload-using-command). Upload using command line tool {% include 'tutorial_expectations' %} -To upload a file to Keep using @arv keep put@: +To upload a file to Keep using @arv-put@: -
~$ arv keep put var-GS000016015-ASM.tsv.bz2
+
~$ arv-put var-GS000016015-ASM.tsv.bz2
 216M / 216M 100.0%
 Collection saved as ...
 qr1hi-4zz18-xxxxxxxxxxxxxxx
 
+ The output value @qr1hi-4zz18-xxxxxxxxxxxxxxx@ is the uuid of the Arvados collection created. -The file used in this example is a freely available TSV file containing variant annotations from "Personal Genome Project (PGP)":http://www.pgp-hms.org participant "hu599905.":https://my.pgp-hms.org/profile/hu599905), downloadable "here":https://warehouse.pgp-hms.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2. +Note: The file used in this example is a freely available TSV file containing variant annotations from the "Personal Genome Project (PGP)":http://www.pgp-hms.org participant "hu599905":https://my.pgp-hms.org/profile/hu599905), downloadable "here":https://warehouse.pgp-hms.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2. Alternatively, you can replace @var-GS000016015-ASM.tsv.bz2@ with the name of any file you have locally, or you could get the TSV file by "downloading it from Keep.":{{site.baseurl}}/user/tutorials/tutorial-keep-get.html -It is also possible to upload an entire directory with @arv keep put@: +It is also possible to upload an entire directory with @arv-put@:
~$ mkdir tmp
 ~$ echo "hello alice" > tmp/alice.txt
 ~$ echo "hello bob" > tmp/bob.txt
 ~$ echo "hello carol" > tmp/carol.txt
-~$ arv keep put tmp
+~$ arv-put tmp
 0M / 0M 100.0%
 Collection saved as ...
 qr1hi-4zz18-yyyyyyyyyyyyyyy
 
-In both examples, the @arv keep put@ command created a collection. The first collection contains the single uploaded file. The second collection contains the entire uploaded directory. +In both examples, the @arv-put@ command created a collection. The first collection contains the single uploaded file. The second collection contains the entire uploaded directory. -@arv keep put@ accepts quite a few optional command line arguments, which are described on the "arv subcommands":{{site.baseurl}}/sdk/cli/subcommands.html#arv-keep-put page. +@arv-put@ accepts quite a few optional command line arguments, which are described on the "arv subcommands":{{site.baseurl}}/sdk/cli/subcommands.html#arv-keep-put page. h3. Locate your collection in Workbench -Visit the Workbench *Dashboard*. Click on *Projects* dropdown menu in the top navigation menu, select your *Home* project. Your newly uploaded collection should appear near the top of the *Data collections* tab. The collection locator printed by @arv keep put@ will appear under the *name* column. +Visit the Workbench *Dashboard*. Click on *Projects* dropdown menu in the top navigation menu, select your *Home* project. Your newly uploaded collection should appear near the top of the *Data collections* tab. The collection name printed by @arv-put@ will appear under the *name* column. -To move the collection to a different project, check the box at the left of the collection row. Pull down the *Selection...* menu near the top of the page tab, and select *Move selected*. This will open a dialog box where you can select a destination project for the collection. Click a project, then finally the Move button. +To move the collection to a different project, check the box at the left of the collection row. Pull down the *Selection...* menu near the top of the page tab, and select *Move selected...* button. This will open a dialog box where you can select a destination project for the collection. Click a project, then finally the Move button. !{display: block;margin-left: 25px;margin-right: auto;}{{ site.baseurl }}/images/workbench-move-selected.png! @@ -76,4 +82,4 @@ Click on the *Browse...* button and select the files you would like to upload. S *Note:* If you leave the collection page during the upload, the upload process will be aborted and you will need to upload the files again. -*Note:* You can also use the Upload tab to add files to an existing collection. +*Note:* You can also use the Upload tab to add additional files to an existing collection.