X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/f92e43f87f137e00d3e23a2defa5c891da0e8462..b983edff6a9053b686275af980ce336283fd3c27:/doc/install/install-compute-node.html.textile.liquid diff --git a/doc/install/install-compute-node.html.textile.liquid b/doc/install/install-compute-node.html.textile.liquid index 7eff16ba56..9a64ac76d7 100644 --- a/doc/install/install-compute-node.html.textile.liquid +++ b/doc/install/install-compute-node.html.textile.liquid @@ -8,22 +8,22 @@ h2. Install dependencies First, "add the appropriate package repository for your distribution":{{ site.baseurl }}/install/install-manual-prerequisites.html#repos. +{% include 'note_python27_sc' %} + On Debian-based systems: -
~$ sudo apt-get install perl python-virtualenv fuse python-arvados-python-client python-arvados-fuse crunchstat iptables ca-certificates
+
~$ sudo apt-get install perl python-virtualenv fuse python-arvados-python-client python-arvados-fuse crunchstat arvados-docker-cleaner iptables ca-certificates
 
On Red Hat-based systems: -
~$ sudo yum install perl python27-python-virtualenv fuse python27-python-arvados-python-client python27-python-arvados-fuse crunchstat iptables ca-certificates
+
~$ sudo yum install perl python27-python-virtualenv fuse python27-python-arvados-python-client python27-python-arvados-fuse crunchstat arvados-docker-cleaner iptables ca-certificates
 
-{% include 'note_python27_sc' %} - h2. Install Docker Compute nodes must have Docker installed to run jobs inside containers. This requires a relatively recent version of Linux (at least upstream version 3.10, or a distribution version with the appropriate patches backported). Follow the "Docker Engine installation documentation":https://docs.docker.com/ for your distribution. @@ -54,7 +54,7 @@ Install SLURM following "the same process you used to install the Crunch dispatc h2. Copy configuration files from the dispatcher (API server) -The @/etc/slurm-llnl/slurm.conf@ and @/etc/munge/munge.key@ files need to be identicaly across the dispatcher and all compute nodes. Copy the files you created in the "Install the Crunch dispatcher":install-crunch-dispatch.html step to this compute node. +The @slurm.conf@ and @/etc/munge/munge.key@ files need to be identical across the dispatcher and all compute nodes. Copy the files you created in the "Install the Crunch dispatcher":install-crunch-dispatch.html step to this compute node. h2. Configure FUSE @@ -74,7 +74,44 @@ user_allow_other
-h2. Crunch user account +h2. Configure the Docker cleaner + +The arvados-docker-cleaner program removes least recently used docker images as needed to keep disk usage below a configured limit. + +{% include 'notebox_begin' %} +This also removes all containers as soon as they exit, as if they were run with @docker run --rm@. If you need to debug or inspect containers after they stop, temporarily stop arvados-docker-cleaner or run it with @--remove-stopped-containers never@. +{% include 'notebox_end' %} + +Install runit to supervise the Docker cleaner daemon. {% include 'install_runit' %} + +Configure runit to run the image cleaner using a suitable quota for your compute nodes and workload: + + +
~$ sudo mkdir -p /etc/sv
+~$ cd /etc/sv
+/etc/sv$ sudo mkdir arvados-docker-cleaner; cd arvados-docker-cleaner
+/etc/sv/arvados-docker-cleaner$ sudo mkdir log log/main
+/etc/sv/arvados-docker-cleaner$ sudo sh -c 'cat >log/run' <<'EOF'
+#!/bin/sh
+exec svlogd -tt main
+EOF
+/etc/sv/arvados-docker-cleaner$ sudo sh -c 'cat >run' <<'EOF'
+#!/bin/sh
+exec python3 -m arvados_docker.cleaner --quota 50G
+EOF
+/etc/sv/arvados-docker-cleaner$ sudo chmod +x run log/run
+/etc/sv/arvados-docker-cleaner$ sudo ln -s "$(pwd)" /etc/service/
+
+
+ +If you are using a different daemon supervisor, or if you want to test the daemon in a terminal window, an equivalent shell command to run arvados-docker-cleaner is: + + +
python3 -m arvados_docker.cleaner --quota 50G
+
+
+ +h2. Add a Crunch user account Create a Crunch user account, and add it to the @fuse@ and @docker@ groups so it can use those tools: @@ -110,8 +147,7 @@ if ! test -f /root/node.json ; then import arvados, json, socket fqdn = socket.getfqdn() hostname, _, domain = fqdn.partition('.') -ip_address = socket.gethostbyname(fqdn) -node = arvados.api('v1').nodes().create(body={'hostname': hostname, 'domain': domain, 'ip_address': ip_address}).execute() +node = arvados.api('v1').nodes().create(body={'hostname': hostname, 'domain': domain}).execute() with open('/root/node.json', 'w') as node_file: json.dump(node, node_file, indent=2) EOF @@ -141,4 +177,3 @@ And remove your token from the environment:
-