X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/f35ca630699460653f03702afec4a57866130421..1b2d73e101e1fb27de201b33142c081e80bb7fc6:/apps/workbench/app/helpers/application_helper.rb

diff --git a/apps/workbench/app/helpers/application_helper.rb b/apps/workbench/app/helpers/application_helper.rb
index 981b7cd389..15bf77fa09 100644
--- a/apps/workbench/app/helpers/application_helper.rb
+++ b/apps/workbench/app/helpers/application_helper.rb
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
 module ApplicationHelper
   def current_user
     controller.current_user
@@ -11,8 +15,13 @@ module ApplicationHelper
     Rails.configuration.arvados_v1_base.gsub /https?:\/\/|\/arvados\/v1/,''
   end
 
+  def current_uuid_prefix
+    current_api_host[0..4]
+  end
+
   def render_markup(markup)
-    raw RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile) if markup
+    allowed_tags = Rails::Html::Sanitizer.white_list_sanitizer.allowed_tags + %w(table tbody th tr td col colgroup caption thead tfoot)
+    sanitize(raw(RedCloth.new(markup.to_s).to_html(:refs_arvados, :textile)), tags: allowed_tags) if markup
   end
 
   def human_readable_bytes_html(n)
@@ -39,13 +48,6 @@ module ApplicationHelper
     end
 
     return h(n)
-    #raw = n.to_s
-    #cooked = ''
-    #while raw.length > 3
-    #  cooked = ',' + raw[-3..-1] + cooked
-    #  raw = raw[0..-4]
-    #end
-    #cooked = raw + cooked
   end
 
   def resource_class_for_uuid(attrvalue, opts={})
@@ -126,7 +128,11 @@ module ApplicationHelper
           else
             begin
               if resource_class.name == 'Collection'
-                link_name = collections_for_object(link_uuid).andand.first.andand.friendly_link_name
+                if CollectionsHelper.match(link_uuid)
+                  link_name = collection_for_pdh(link_uuid).andand.first.andand.portable_data_hash
+                else
+                  link_name = collections_for_object(link_uuid).andand.first.andand.friendly_link_name
+                end
               else
                 link_name = object_for_dataclass(resource_class, link_uuid).andand.friendly_link_name
               end
@@ -270,10 +276,10 @@ module ApplicationHelper
       "data-placement" => "bottom",
       "data-type" => input_type,
       "data-title" => "Edit #{attr.to_s.gsub '_', ' '}",
-      "data-name" => attr,
+      "data-name" => htmloptions['selection_name'] || attr,
       "data-object-uuid" => object.uuid,
       "data-toggle" => "manual",
-      "data-value" => attrvalue,
+      "data-value" => htmloptions['data-value'] || attrvalue,
       "id" => span_id,
       :class => "editable #{is_textile?( object, attr ) ? 'editable-textile' : ''}"
     }.merge(htmloptions).merge(ajax_options)
@@ -418,6 +424,30 @@ module ApplicationHelper
     lt
   end
 
+  def get_cwl_main(workflow)
+    if workflow[:"$graph"].nil?
+      return workflow
+    else
+      workflow[:"$graph"].each do |tool|
+        if tool[:id] == "#main"
+          return tool
+        end
+      end
+    end
+  end
+
+  def get_cwl_inputs(workflow)
+    get_cwl_main(workflow)[:inputs]
+  end
+
+
+  def cwl_shortname(id)
+    if id[0] == "#"
+      id = id[1..-1]
+    end
+    return id.split("/")[-1]
+  end
+
   def cwl_input_info(input_schema)
     required = !(input_schema[:type].include? "null")
     if input_schema[:type].is_a? Array
@@ -427,7 +457,7 @@ module ApplicationHelper
     elsif input_schema[:type].is_a? Hash
       primary_type = input_schema[:type]
     end
-    param_id = input_schema[:id]
+    param_id = cwl_shortname(input_schema[:id])
     return required, primary_type, param_id
   end
 
@@ -510,7 +540,7 @@ module ApplicationHelper
                      "data-type" => "select",
                      "data-source" => (opt_empty_selection + [{value: "true", text: "true"}, {value: "false", text: "false"}]).to_json,
                      "data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
-                     "data-title" => "Set value for #{input_schema[:id]}",
+                     "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
                      "data-name" => dn,
                      "data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
                      "data-value" => attrvalue.to_s,
@@ -526,7 +556,7 @@ module ApplicationHelper
                      "data-type" => "select",
                      "data-source" => (opt_empty_selection + primary_type[:symbols].map {|i| {:value => i, :text => i} }).to_json,
                      "data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
-                     "data-title" => "Set value for #{input_schema[:id]}",
+                     "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
                      "data-name" => dn,
                      "data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
                      "data-value" => attrvalue,
@@ -547,7 +577,7 @@ module ApplicationHelper
                      "data-placement" => "bottom",
                      "data-type" => datatype,
                      "data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
-                     "data-title" => "Set value for #{input_schema[:id]}",
+                     "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
                      "data-name" => dn,
                      "data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
                      "data-value" => attrvalue,
@@ -584,6 +614,7 @@ module ApplicationHelper
 
   RESOURCE_CLASS_ICONS = {
     "Collection" => "fa-archive",
+    "ContainerRequest" => "fa-gears",
     "Group" => "fa-users",
     "Human" => "fa-male",  # FIXME: Use a more inclusive icon.
     "Job" => "fa-gears",
@@ -598,6 +629,7 @@ module ApplicationHelper
     "Trait" => "fa-clipboard",
     "User" => "fa-user",
     "VirtualMachine" => "fa-terminal",
+    "Workflow" => "fa-gears",
   }
   DEFAULT_ICON_CLASS = "fa-cube"
 
@@ -645,6 +677,13 @@ module ApplicationHelper
     render_runtime duration, use_words, round_to_min
   end
 
+  # Keep locators are expected to be of the form \"...<pdh/file_path>\"
+  JSON_KEEP_LOCATOR_REGEXP = /([0-9a-f]{32}\+\d+[^'"]*?)(?=['"]|\z|$)/
+  def keep_locator_in_json str
+    # Return a list of all matches
+    str.scan(JSON_KEEP_LOCATOR_REGEXP).flatten
+  end
+
 private
   def is_textile?( object, attr )
     is_textile = object.textile_attributes.andand.include?(attr)