X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/f35aae3c6732a7e08253367517c61ab3071086d1..c36ec856598f214e340e3335ddd347d131335bf8:/sdk/cwl/tests/arvados-tests.sh diff --git a/sdk/cwl/tests/arvados-tests.sh b/sdk/cwl/tests/arvados-tests.sh index e3f1622836..b1a1837466 100755 --- a/sdk/cwl/tests/arvados-tests.sh +++ b/sdk/cwl/tests/arvados-tests.sh @@ -1,9 +1,14 @@ -#!/bin/sh +#!/bin/bash # Copyright (C) The Arvados Authors. All rights reserved. # # SPDX-License-Identifier: Apache-2.0 +# +# This in an additional integration test suite for Arvados specific +# bugs and features that are not covered by the unit tests or CWL +# conformance tests. +# -set -e +set -ex if ! arv-get d7514270f356df848477718d58308cc4+94 > /dev/null ; then arv-put --portable-data-hash testdir/* @@ -18,6 +23,9 @@ if ! arv-get 20850f01122e860fb878758ac1320877+71 > /dev/null ; then arv-put --portable-data-hash samples/sample1_S01_R1_001.fastq.gz fi +# Use the python executor associated with the installed OS package, if present. +python=$(((ls /usr/share/python3*/dist/python3-arvados-cwl-runner/bin/python || echo python3) | head -n1) 2>/dev/null) + # Test for #18888 # This is a standalone test because the bug was observed with this # command line and was thought to be due to command line handling. @@ -26,7 +34,7 @@ arvados-cwl-runner 18888-download_def.cwl --scripts scripts/ # Test for #19070 # The most effective way to test this seemed to be to write an # integration test to check for the expected behavior. -python test_copy_deps.py +$python test_copy_deps.py # Test for #17004 # Checks that the final output collection has the expected properties.