X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/ef6f7202858cba65e06cc1a32d52ee2305687bc8..cc3857d9fdcd7588af329a9b2452e0ef09eb68a4:/sdk/cwl/arvados_cwl/runner.py diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py index 054d3530cf..49d37ebd5a 100644 --- a/sdk/cwl/arvados_cwl/runner.py +++ b/sdk/cwl/arvados_cwl/runner.py @@ -18,6 +18,7 @@ import ruamel.yaml as yaml from .arvdocker import arv_docker_get_image from .pathmapper import ArvPathMapper +from ._version import __version__ logger = logging.getLogger('arvados.cwl-runner') @@ -129,13 +130,18 @@ def upload_instance(arvrunner, name, tool, job_order): job_order.get("id", "#"), False) - adjustDirObjs(job_order, trim_listing) - if "id" in job_order: del job_order["id"] return workflowmapper +def arvados_jobs_image(arvrunner): + img = "arvados/jobs:"+__version__ + try: + arv_docker_get_image(arvrunner.api, {"dockerPull": img}, True, arvrunner.project_uuid) + except Exception as e: + raise Exception("Docker image %s is not available\n%s" % (img, e) ) + return img class Runner(object): def __init__(self, runner, tool, job_order, enable_reuse, output_name): @@ -153,7 +159,9 @@ class Runner(object): def arvados_job_spec(self, *args, **kwargs): self.name = os.path.basename(self.tool.tool["id"]) - return upload_instance(self.arvrunner, self.name, self.tool, self.job_order) + workflowmapper = upload_instance(self.arvrunner, self.name, self.tool, self.job_order) + adjustDirObjs(self.job_order, trim_listing) + return workflowmapper def done(self, record): if record["state"] == "Complete":