X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/ec89530b9bd210a4bba8219f374f89ff88021fcd..09cbdc3074b3f1e69c9c537875146f6da0a6ed8f:/doc/_config.yml diff --git a/doc/_config.yml b/doc/_config.yml index 39fe22fde3..5c8d77382e 100644 --- a/doc/_config.yml +++ b/doc/_config.yml @@ -26,9 +26,10 @@ navbar: - user/getting_started/community.html.textile.liquid - Walkthough: - user/tutorials/wgs-tutorial.html.textile.liquid - - Run a workflow using Workbench: + - Using Workbench: - user/getting_started/workbench.html.textile.liquid - user/tutorials/tutorial-workflow-workbench.html.textile.liquid + - user/topics/workbench-migration.html.textile.liquid - Working at the Command Line: - user/getting_started/setup-cli.html.textile.liquid - user/reference/api-tokens.html.textile.liquid @@ -49,6 +50,7 @@ navbar: - user/topics/storage-classes.html.textile.liquid - Data Analysis with Workflows: - user/cwl/arvados-vscode-training.html.md.liquid + - user/cwl/rnaseq-cwl-training.html.textile.liquid - user/cwl/cwl-runner.html.textile.liquid - user/cwl/cwl-run-options.html.textile.liquid - user/tutorials/writing-cwl-workflow.html.textile.liquid @@ -87,6 +89,7 @@ navbar: - sdk/cli/index.html.textile.liquid - sdk/cli/reference.html.textile.liquid - sdk/cli/subcommands.html.textile.liquid + - sdk/cli/project-management.html.textile.liquid - Go: - sdk/go/index.html.textile.liquid - sdk/go/example.html.textile.liquid @@ -100,12 +103,6 @@ navbar: - sdk/java-v2/index.html.textile.liquid - sdk/java-v2/example.html.textile.liquid - sdk/java-v2/javadoc.html.textile.liquid - - Java v1: - - sdk/java/index.html.textile.liquid - - sdk/java/example.html.textile.liquid - - Perl: - - sdk/perl/index.html.textile.liquid - - sdk/perl/example.html.textile.liquid api: - Concepts: - api/index.html.textile.liquid @@ -132,6 +129,7 @@ navbar: - api/keep-s3.html.textile.liquid - api/keep-web-urls.html.textile.liquid - api/projects.html.textile.liquid + - api/properties.html.textile.liquid - api/methods/collections.html.textile.liquid - api/methods/repositories.html.textile.liquid - Container engine: @@ -162,6 +160,8 @@ navbar: - Computation with Crunch: - api/execution.html.textile.liquid - architecture/dispatchcloud.html.textile.liquid + - architecture/hpc.html.textile.liquid + - architecture/singularity.html.textile.liquid - Other: - api/permission-model.html.textile.liquid - architecture/federation.html.textile.liquid @@ -171,21 +171,22 @@ navbar: - Users and Groups: - admin/user-management.html.textile.liquid - admin/user-management-cli.html.textile.liquid + - admin/group-management.html.textile.liquid - admin/reassign-ownership.html.textile.liquid - admin/link-accounts.html.textile.liquid - - admin/group-management.html.textile.liquid - admin/federation.html.textile.liquid - admin/merge-remote-account.html.textile.liquid - admin/migrating-providers.html.textile.liquid - - user/topics/arvados-sync-groups.html.textile.liquid + - user/topics/arvados-sync-external-sources.html.textile.liquid - admin/scoped-tokens.html.textile.liquid - admin/token-expiration-policy.html.textile.liquid - - admin/user-activity.html.textile.liquid - Monitoring: - admin/logging.html.textile.liquid - admin/metrics.html.textile.liquid - admin/health-checks.html.textile.liquid + - admin/diagnostics.html.textile.liquid - admin/management-token.html.textile.liquid + - admin/user-activity.html.textile.liquid - Data Management: - admin/collection-versioning.html.textile.liquid - admin/collection-managed-properties.html.textile.liquid @@ -193,7 +194,7 @@ navbar: - admin/keep-balance.html.textile.liquid - admin/controlling-container-reuse.html.textile.liquid - admin/logs-table-management.html.textile.liquid - - admin/workbench2-vocabulary.html.textile.liquid + - admin/metadata-vocabulary.html.textile.liquid - admin/storage-classes.html.textile.liquid - admin/keep-recovering-data.html.textile.liquid - admin/keep-measuring-deduplication.html.textile.liquid @@ -209,8 +210,6 @@ navbar: - Docker quick start: - install/arvbox.html.textile.liquid - Installation with Salt: - - install/salt.html.textile.liquid - - install/salt-vagrant.html.textile.liquid - install/salt-single-host.html.textile.liquid - install/salt-multi-host.html.textile.liquid - Arvados on Kubernetes: @@ -220,11 +219,13 @@ navbar: - Manual installation: - install/install-manual-prerequisites.html.textile.liquid - install/packages.html.textile.liquid - - admin/upgrading.html.textile.liquid - Configuration: - install/config.html.textile.liquid - - admin/config-migration.html.textile.liquid + - admin/config-urls.html.textile.liquid - admin/config.html.textile.liquid + - Maintenance and upgrading: + - admin/upgrading.html.textile.liquid + - admin/maintenance-and-upgrading.html.textile.liquid - Core: - install/install-api-server.html.textile.liquid - Keep: @@ -245,15 +246,20 @@ navbar: - install/install-shell-server.html.textile.liquid - install/install-webshell.html.textile.liquid - install/install-arv-git-httpd.html.textile.liquid - - Containers API (cloud): + - Containers API (all): - install/install-jobs-image.html.textile.liquid + - Containers API (cloud): - install/crunch2-cloud/install-compute-node.html.textile.liquid - install/crunch2-cloud/install-dispatch-cloud.html.textile.liquid - - Containers API (slurm): + - Compute nodes (Slurm or LSF): + - install/crunch2/install-compute-node-docker.html.textile.liquid + - install/crunch2/install-compute-node-singularity.html.textile.liquid + - Containers API (Slurm): - install/crunch2-slurm/install-dispatch.html.textile.liquid - install/crunch2-slurm/configure-slurm.html.textile.liquid - - install/crunch2-slurm/install-compute-node.html.textile.liquid - install/crunch2-slurm/install-test.html.textile.liquid + - Containers API (LSF): + - install/crunch2-lsf/install-dispatch.html.textile.liquid - Additional configuration: - install/container-shell-access.html.textile.liquid - External dependencies: