X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/eae1286badb67ee63888633ff59bda9cb736131e..b3f083ce49a50521d96daa28f896d857384222fb:/sdk/cwl/arvados_cwl/arvjob.py

diff --git a/sdk/cwl/arvados_cwl/arvjob.py b/sdk/cwl/arvados_cwl/arvjob.py
index 25f64ea230..2731b26944 100644
--- a/sdk/cwl/arvados_cwl/arvjob.py
+++ b/sdk/cwl/arvados_cwl/arvjob.py
@@ -280,7 +280,7 @@ class RunnerJob(Runner):
         if self.tool.tool["id"].startswith("keep:"):
             self.job_order["cwl:tool"] = self.tool.tool["id"][5:]
         else:
-            packed = packed_workflow(self.arvrunner, self.tool)
+            packed = packed_workflow(self.arvrunner, self.tool, self.merged_map)
             wf_pdh = upload_workflow_collection(self.arvrunner, self.name, packed)
             self.job_order["cwl:tool"] = "%s/workflow.cwl#main" % wf_pdh
 
@@ -370,7 +370,7 @@ class RunnerTemplate(object):
     }
 
     def __init__(self, runner, tool, job_order, enable_reuse, uuid,
-                 submit_runner_ram=0, name=None):
+                 submit_runner_ram=0, name=None, merged_map=None):
         self.runner = runner
         self.tool = tool
         self.job = RunnerJob(
@@ -381,7 +381,8 @@ class RunnerTemplate(object):
             output_name=None,
             output_tags=None,
             submit_runner_ram=submit_runner_ram,
-            name=name)
+            name=name,
+            merged_map=merged_map)
         self.uuid = uuid
 
     def pipeline_component_spec(self):