X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/e4a0e3acba0916dc1c8ae4a635713fba7e3a72dc..7407f41105f8000bb3908d41a31daaf3a30d9440:/sdk/cwl/tests/arvados-tests.yml diff --git a/sdk/cwl/tests/arvados-tests.yml b/sdk/cwl/tests/arvados-tests.yml index 8eac71886c..c4c0968756 100644 --- a/sdk/cwl/tests/arvados-tests.yml +++ b/sdk/cwl/tests/arvados-tests.yml @@ -102,8 +102,8 @@ "size": 32 }, { - "checksum": "sha1$83483b9c65d99967aecc794c14f9f4743314d186", - "location": "sample2_S01_R3_001.fastq.txt", + "checksum": "sha1$5f3b4df1b0f7fdced751fc6079778600ad9fdb45", + "location": "sample2_S01_R1_001.fastq.txt", "class": "File", "size": 32 } @@ -118,6 +118,12 @@ tool: 12418-glob-empty-collection.cwl doc: "Test glob output on empty collection" +- job: null + output: + out: null + tool: 13976-keepref-wf.cwl + doc: "Test issue 13976" + - job: null output: out: out @@ -173,6 +179,12 @@ tool: wf/runin-reqs-wf4.cwl doc: "RunInSingleContainer discovers static resource request in subworkflow steps" +- job: null + output: + out: null + tool: wf/runin-reqs-wf5.cwl + doc: "RunInSingleContainer has minimum 128 MiB RAM" + - job: secondaryFiles/inp3.yml output: {} tool: secondaryFiles/example1.cwl @@ -206,9 +218,16 @@ output: out: null tool: wf-defaults/wf4.cwl - doc: default in embedded subworkflow missing 'id' field + doc: default in embedded subworkflow missing 'id' field, v1.0 should_fail: true +- job: null + output: + out: null + tool: wf-defaults/wf8.cwl + doc: default in embedded subworkflow missing 'id' field, v1.1 + should_fail: false + - job: null output: out: null @@ -226,3 +245,87 @@ out: null tool: wf-defaults/wf7.cwl doc: workflow level default in RunInSingleContainer + +- job: 13931-size-job.yml + output: + "out": { + "checksum": "sha1$5bf6e5357bd42a6b1d2a3a040e16a91490064d26", + "location": "size.txt", + "class": "File", + "size": 3 + } + tool: 13931-size.cwl + doc: Test that size is set for files in Keep + +- job: 15241-writable-dir-job.json + output: { + "results": { + "basename": "keep:6dd5fa20622d5a7a23c9147d0927da2a+180", + "class": "Directory", + "listing": [ + { + "basename": "d7514270f356df848477718d58308cc4+94", + "class": "Directory", + "listing": [ + { + "basename": "a", + "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709", + "class": "File", + "location": "a", + "size": 0 + }, + { + "basename": "blurg.txt", + "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709", + "class": "File", + "location": "blurg.txt", + "size": 0 + }, + { + "basename": "c", + "class": "Directory", + "listing": [ + { + "basename": "d", + "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709", + "class": "File", + "location": "d", + "size": 0 + } + ], + "location": "c" + }, + { + "basename": "b", + "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709", + "class": "File", + "location": "b", + "size": 0 + } + ], + "location": "d7514270f356df848477718d58308cc4+94" + } + ], + "location": "keep:6dd5fa20622d5a7a23c9147d0927da2a+180" + } + } + tool: 15241-writable-dir.cwl + doc: Test for writable collections + +- job: badkeep.yml + output: {} + should_fail: true + tool: 15295-bad-keep-ref.cwl + doc: Test checking for invalid keepref + +- job: listing-job.yml + output: { + "out": { + "class": "File", + "location": "output.txt", + "size": 5, + "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1" + } + } + tool: 16169-no-listing-hint.cwl + doc: "Test cwltool:LoadListingRequirement propagation"