X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/e0fc29c78d959d19c3d63d3bfb204b1c444518bd..86af9b2ebc9240e9041870786e87021c94f11eea:/sdk/cwl/arvados_cwl/__init__.py diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py index 0d0d41611f..80734d2f7c 100644 --- a/sdk/cwl/arvados_cwl/__init__.py +++ b/sdk/cwl/arvados_cwl/__init__.py @@ -23,6 +23,7 @@ from .arvcontainer import ArvadosContainer, RunnerContainer from .arvjob import ArvadosJob, RunnerJob, RunnerTemplate from .arvtool import ArvadosCommandTool from .fsaccess import CollectionFsAccess +from .arvworkflow import make_workflow from cwltool.process import shortname, UnsupportedRequirement from cwltool.pathmapper import adjustFileObjs @@ -172,6 +173,9 @@ class ArvCwlRunner(object): # cwltool.main will write our return value to stdout. return tmpl.uuid + if kwargs.get("create_workflow") or kwargs.get("update_workflow"): + return make_workflow(self, tool, job_order, self.project_uuid, kwargs.get("update_workflow")) + self.debug = kwargs.get("debug") self.ignore_docker_for_reuse = kwargs.get("ignore_docker_for_reuse") @@ -335,6 +339,8 @@ def arg_parser(): # type: () -> argparse.ArgumentParser exgroup.add_argument("--local", action="store_false", help="Run workflow on local host (submits jobs to Arvados).", default=True, dest="submit") exgroup.add_argument("--create-template", action="store_true", help="Create an Arvados pipeline template.") + exgroup.add_argument("--create-workflow", action="store_true", help="Create an Arvados workflow.") + exgroup.add_argument("--update-workflow", type=str, help="Update Arvados workflow.") exgroup = parser.add_mutually_exclusive_group() exgroup.add_argument("--wait", action="store_true", help="After submitting workflow runner job, wait for completion.", @@ -361,7 +367,7 @@ def main(args, stdout, stderr, api_client=None): job_order_object = None arvargs = parser.parse_args(args) - if arvargs.create_template and not arvargs.job_order: + if (arvargs.create_template or arvargs.create_workflow or arvargs.update_workflow) and not arvargs.job_order: job_order_object = ({}, "") try: