X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/dfda2d511b5581968c5fa456c78776ac453dedd9..0f644e242ef37c911ad3dc25aca8135c339de349:/doc/_config.yml diff --git a/doc/_config.yml b/doc/_config.yml index 5ed5af5cb5..75165a0fdd 100644 --- a/doc/_config.yml +++ b/doc/_config.yml @@ -1,3 +1,7 @@ +# Copyright (C) The Arvados Authors. All rights reserved. +# +# SPDX-License-Identifier: CC-BY-SA-3.0 + # baseurl is the location of the generated site from the browser's # perspective (e.g., http://doc.arvados.org or # file:///tmp/arvados/doc/.site). To make docs show up inside @@ -28,9 +32,9 @@ navbar: - Welcome: - user/index.html.textile.liquid - user/getting_started/community.html.textile.liquid - - Run a pipeline using Workbench: + - Run a workflow using Workbench: - user/getting_started/workbench.html.textile.liquid - - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid + - user/tutorials/tutorial-workflow-workbench.html.textile.liquid - Access an Arvados virtual machine: - user/getting_started/vm-login-with-webshell.html.textile.liquid - user/getting_started/ssh-access-unix.html.textile.liquid @@ -40,26 +44,29 @@ navbar: - Working with data sets: - user/tutorials/tutorial-keep.html.textile.liquid - user/tutorials/tutorial-keep-get.html.textile.liquid + - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid - user/tutorials/tutorial-keep-mount.html.textile.liquid - user/topics/keep.html.textile.liquid - user/topics/arv-copy.html.textile.liquid - - Using Common Workflow Language: + - Running workflows at the command line: - user/cwl/cwl-runner.html.textile.liquid - - user/cwl/cwl-style.html.textile.liquid - - Working on the command line: + - user/cwl/cwl-run-options.html.textile.liquid - user/topics/running-pipeline-command-line.html.textile.liquid - user/topics/arv-run.html.textile.liquid - Working with git repositories: - user/tutorials/add-new-repository.html.textile.liquid - user/tutorials/git-arvados-guide.html.textile.liquid - - Develop an Arvados pipeline: + - Develop an Arvados workflow: - user/tutorials/intro-crunch.html.textile.liquid + - user/tutorials/writing-cwl-workflow.html.textile.liquid + - user/cwl/cwl-style.html.textile.liquid + - user/cwl/cwl-extensions.html.textile.liquid + - user/topics/arv-docker.html.textile.liquid - user/tutorials/running-external-program.html.textile.liquid - user/topics/crunch-tools-overview.html.textile.liquid - user/tutorials/tutorial-firstscript.html.textile.liquid - user/tutorials/tutorial-submit-job.html.textile.liquid - user/topics/tutorial-parallel.html.textile.liquid - - user/topics/arv-docker.html.textile.liquid - Develop a web service: - user/topics/arv-web.html.textile.liquid - Reference: @@ -78,78 +85,67 @@ navbar: - sdk/index.html.textile.liquid - Python: - sdk/python/sdk-python.html.textile.liquid + - sdk/python/example.html.textile.liquid - sdk/python/python.html.textile.liquid - sdk/python/crunch-utility-libraries.html.textile.liquid - sdk/python/events.html.textile.liquid + - CLI: + - sdk/cli/install.html.textile.liquid + - sdk/cli/index.html.textile.liquid + - sdk/cli/reference.html.textile.liquid + - sdk/cli/subcommands.html.textile.liquid + - Go: + - sdk/go/index.html.textile.liquid + - sdk/go/example.html.textile.liquid - Perl: - sdk/perl/index.html.textile.liquid + - sdk/perl/example.html.textile.liquid - Ruby: - sdk/ruby/index.html.textile.liquid + - sdk/ruby/example.html.textile.liquid - Java: - sdk/java/index.html.textile.liquid - - Go: - - sdk/go/index.html.textile.liquid - - CLI: - - sdk/cli/index.html.textile.liquid - - sdk/cli/install.html.textile.liquid - - sdk/cli/reference.html.textile.liquid - - sdk/cli/subcommands.html.textile.liquid + - sdk/java/example.html.textile.liquid api: - Concepts: - api/index.html.textile.liquid - - api/authentication.html.textile.liquid + - api/tokens.html.textile.liquid + - api/requests.html.textile.liquid - api/methods.html.textile.liquid - api/resources.html.textile.liquid - - api/crunch-scripts.html.textile.liquid - api/permission-model.html.textile.liquid - - API Methods: + - api/storage.html.textile.liquid + - api/execution.html.textile.liquid + - Permission and authentication: - api/methods/api_client_authorizations.html.textile.liquid - api/methods/api_clients.html.textile.liquid - api/methods/authorized_keys.html.textile.liquid - - api/methods/collections.html.textile.liquid - - api/methods/container_requests.html.textile.liquid - - api/methods/containers.html.textile.liquid - api/methods/groups.html.textile.liquid - - api/methods/humans.html.textile.liquid - - api/methods/jobs.html.textile.liquid - - api/methods/job_tasks.html.textile.liquid - - api/methods/keep_disks.html.textile.liquid + - api/methods/users.html.textile.liquid + - System resources: - api/methods/keep_services.html.textile.liquid - api/methods/links.html.textile.liquid - api/methods/logs.html.textile.liquid - api/methods/nodes.html.textile.liquid + - api/methods/virtual_machines.html.textile.liquid + - api/methods/keep_disks.html.textile.liquid + - Data management: + - api/methods/collections.html.textile.liquid + - api/methods/repositories.html.textile.liquid + - Container engine: + - api/methods/container_requests.html.textile.liquid + - api/methods/containers.html.textile.liquid + - api/methods/workflows.html.textile.liquid + - Jobs engine (deprecated): + - api/crunch-scripts.html.textile.liquid + - api/methods/jobs.html.textile.liquid + - api/methods/job_tasks.html.textile.liquid - api/methods/pipeline_instances.html.textile.liquid - api/methods/pipeline_templates.html.textile.liquid - - api/methods/repositories.html.textile.liquid + - Metadata for bioinformatics: + - api/methods/humans.html.textile.liquid - api/methods/specimens.html.textile.liquid - api/methods/traits.html.textile.liquid - - api/methods/users.html.textile.liquid - - api/methods/virtual_machines.html.textile.liquid - - api/methods/workflows.html.textile.liquid - - Schema: - - api/schema/ApiClientAuthorization.html.textile.liquid - - api/schema/ApiClient.html.textile.liquid - - api/schema/AuthorizedKey.html.textile.liquid - - api/schema/Collection.html.textile.liquid - - api/schema/Container.html.textile.liquid - - api/schema/ContainerRequest.html.textile.liquid - - api/schema/Group.html.textile.liquid - - api/schema/Human.html.textile.liquid - - api/schema/Job.html.textile.liquid - - api/schema/JobTask.html.textile.liquid - - api/schema/KeepDisk.html.textile.liquid - - api/schema/KeepService.html.textile.liquid - - api/schema/Link.html.textile.liquid - - api/schema/Log.html.textile.liquid - - api/schema/Node.html.textile.liquid - - api/schema/PipelineInstance.html.textile.liquid - - api/schema/PipelineTemplate.html.textile.liquid - - api/schema/Repository.html.textile.liquid - - api/schema/Specimen.html.textile.liquid - - api/schema/Trait.html.textile.liquid - - api/schema/User.html.textile.liquid - - api/schema/VirtualMachine.html.textile.liquid - - api/schema/Workflow.html.textile.liquid installguide: - Overview: - install/index.html.textile.liquid @@ -160,6 +156,7 @@ navbar: - install/install-postgresql.html.textile.liquid - install/install-sso.html.textile.liquid - install/install-api-server.html.textile.liquid + - install/install-ws.html.textile.liquid - install/install-arv-git-httpd.html.textile.liquid - install/install-workbench-app.html.textile.liquid - install/install-shell-server.html.textile.liquid @@ -168,14 +165,20 @@ navbar: - install/configure-azure-blob-storage.html.textile.liquid - install/install-keepproxy.html.textile.liquid - install/install-keep-web.html.textile.liquid - - Install Crunch v2 on SLURM: + - install/install-keep-balance.html.textile.liquid + - Containers API support on SLURM: - install/crunch2-slurm/install-prerequisites.html.textile.liquid + - install/crunch2-slurm/install-slurm.html.textile.liquid - install/crunch2-slurm/install-compute-node.html.textile.liquid - install/crunch2-slurm/install-dispatch.html.textile.liquid - install/crunch2-slurm/install-test.html.textile.liquid - - Install Crunch v1: + - install/install-nodemanager.html.textile.liquid + - install/install-compute-ping.html.textile.liquid + - Jobs API support (deprecated): - install/install-crunch-dispatch.html.textile.liquid - install/install-compute-node.html.textile.liquid - Helpful hints: - install/copy_pipeline_from_curoverse.html.textile.liquid - install/cheat_sheet.html.textile.liquid + - Migrating from Docker 1.9: + - install/migrate-docker19.html.textile.liquid