git@gitserver:~$ echo 'PATH=$HOME/bin:$PATH' >.profile
git@gitserver:~$ source .profile
-git@gitserver:~$ git clone --branch v3.6.3 git://github.com/sitaramc/gitolite
+git@gitserver:~$ git clone --branch v3.6.4 https://github.com/sitaramc/gitolite
...
Note: checking out '5d24ae666bfd2fa9093d67c840eb8d686992083f'.
...
@@ -247,6 +238,7 @@ On Red Hat-based systems:
~$ sudo yum install git arvados-git-httpd
+~$ sudo systemctl enable arvados-git-httpd
@@ -254,10 +246,9 @@ Verify that @arvados-git-httpd@ and @git-http-backend@ can be run:
~$ arvados-git-httpd -h
-Usage of arvados-git-httpd:
- -address="0.0.0.0:80": Address to listen on, "host:port".
- -git-command="/usr/bin/git": Path to git executable. Each authenticated request will execute this program with a single argument, "http-backend".
- -repo-root="/path/to/cwd": Path to git repositories.
+[...]
+Usage: arvados-git-httpd [-config path/to/arvados/git-httpd.yml]
+[...]
~$ git http-backend
Status: 500 Internal Server Error
Expires: Fri, 01 Jan 1980 00:00:00 GMT
@@ -270,48 +261,29 @@ fatal: No REQUEST_METHOD from server
h3. Enable arvados-git-httpd
-On Debian-based systems, install runit:
+{% include 'notebox_begin' %}
-
-~$ sudo apt-get install runit
-
-
+The arvados-git-httpd package includes configuration files for systemd. If you're using a different init system, you'll need to configure a service to start and stop an @arvados-git-httpd@ process as desired.
-On Red Hat-based systems, "install runit from source":http://smarden.org/runit/install.html or use an alternative daemon supervisor.
+{% include 'notebox_end' %}
-Configure runit to run arvados-git-httpd, making sure to update the API host to match your site:
+Create the configuration file @/etc/arvados/git-httpd/git-httpd.yml@. Run @arvados-git-httpd -h@ to learn more about configuration entries.
-~$ cd /etc/sv
-/etc/sv$ sudo mkdir arvados-git-httpd; cd arvados-git-httpd
-/etc/sv/arvados-git-httpd$ sudo mkdir log
-/etc/sv/arvados-git-httpd$ sudo sh -c 'cat >log/run' <<'EOF'
-#!/bin/sh
-mkdir -p main
-chown git:git main
-exec chpst -u git:git svlogd -tt main
-EOF
-/etc/sv/arvados-git-httpd$ sudo sh -c 'cat >run' <<'EOF'
-#!/bin/sh
-export ARVADOS_API_HOST=uuid_prefix.your.domain
-export GITOLITE_HTTP_HOME=/var/lib/arvados/git
-export GL_BYPASS_ACCESS_CHECKS=1
-export PATH="$PATH:/var/lib/arvados/git/bin"
-exec chpst -u git:git arvados-git-httpd -address=:9001 -git-command=/var/lib/arvados/git/gitolite/src/gitolite-shell -repo-root=/var/lib/arvados/git/repositories 2>&1
-EOF
-/etc/sv/arvados-git-httpd$ sudo chmod +x run log/run
+Client:
+ APIHost: uuid_prefix.your.domain
+ Insecure: false
+GitCommand: /var/lib/arvados/git/gitolite/src/gitolite-shell
+GitoliteHome: /var/lib/arvados/git
+Listen: :9001
+RepoRoot: /var/lib/arvados/git/repositories
-If you are using a different daemon supervisor, or if you want to test the daemon in a terminal window, an equivalent shell command to run arvados-git-httpd is:
+Restart the systemd service to ensure the new configuration is used.
-sudo -u git \
- ARVADOS_API_HOST=uuid_prefix.your.domain \
- GITOLITE_HTTP_HOME=/var/lib/arvados/git \
- GL_BYPASS_ACCESS_CHECKS=1 \
- PATH="$PATH:/var/lib/arvados/git/bin" \
- arvados-git-httpd -address=:9001 -git-command=/var/lib/arvados/git/gitolite/src/gitolite-shell -repo-root=/var/lib/arvados/git/repositories 2>&1
+~$ sudo systemctl restart arvados-git-httpd
@@ -353,7 +325,7 @@ h3. Configure the API server to advertise the correct HTTPS URLs
In your API server's @application.yml@ file, add the following entry:
-git_repo_http_base: https://git.uuid_prefix.your.domain/
+git_repo_https_base: https://git.uuid_prefix.your.domain/
@@ -367,3 +339,47 @@ Restart Nginx to make the Nginx and API server configuration changes take effect
gitserver:~$ sudo nginx -s reload
+
+h2. Clone Arvados repository
+
+Here we create a repository object which will be used to set up a hosted clone of the arvados repository on this cluster.
+
+
+~$ uuid_prefix=`arv --format=uuid user current | cut -d- -f1`
+~$ echo "Site prefix is '$uuid_prefix'"
+~$ all_users_group_uuid="$uuid_prefix-j7d0g-fffffffffffffff"
+~$ repo_uuid=`arv --format=uuid repository create --repository "{\"owner_uuid\":\"$uuid_prefix-tpzed-000000000000000\", \"name\":\"arvados\"}"`
+~$ echo "Arvados repository uuid is '$repo_uuid'"
+
+
+Create a link object to make the repository object readable by the "All users" group, and therefore by every active user. This makes it possible for users to run the bundled Crunch scripts by specifying @"script_version":"master","repository":"arvados"@ rather than pulling the Arvados source tree into their own repositories.
+
+
+~$ read -rd $'\000' newlink <<EOF; arv link create --link "$newlink"
+{
+ "tail_uuid":"$all_users_group_uuid",
+ "head_uuid":"$repo_uuid",
+ "link_class":"permission",
+ "name":"can_read"
+}
+EOF
+
+
+In a couple of minutes, your arvados-git-sync cron job will create an empty repository on your git server. Seed it with the real arvados repository. If your git credential helpers were configured correctly when you "set up your shell server":install-shell-server.html, the "git push" command will use your API token instead of prompting you for a username and password.
+
+
+~$ cd /tmp
+/tmp$ git clone --bare https://github.com/curoverse/arvados.git
+/tmp git --git-dir arvados.git push https://git.uuid_prefix.your.domain/arvados.git '*:*'
+
+
+
+If you did not set up a HTTPS service, you can push to git@git.uuid_prefix.your.domain:arvados.git using your SSH key, or by logging in to your git server and using sudo.
+
+
+gitserver:~$ sudo -u git -i bash
+git@gitserver:~$ git clone --bare https://github.com/curoverse/arvados.git /tmp/arvados.git
+git@gitserver:~$ cd /tmp/arvados.git
+git@gitserver:/tmp/arvados.git$ gitolite push /var/lib/arvados/git/repositories/your_arvados_repo_uuid.git '*:*'
+
+