~/you/crunch_scripts$ chmod +x 0-filter.py
@@ -33,7 +33,7 @@ Next, create a file that contains the pipeline definition:
~/you/crunch_scripts$ cat >~/the_pipeline <<EOF
{
- "name":"Filter md5 hash values",
+ "name":"Filter MD5 hash values",
"components":{
"do_hash":{
"script":"hash.py",
@@ -43,7 +43,7 @@ Next, create a file that contains the pipeline definition:
"dataclass": "Collection"
}
},
- "repository":"you",
+ "repository":"$USER",
"script_version":"master",
"output_is_persistent":false
},
@@ -54,7 +54,7 @@ Next, create a file that contains the pipeline definition:
"output_of":"do_hash"
}
},
- "repository":"you",
+ "repository":"$USER",
"script_version":"master",
"output_is_persistent":true
}
@@ -64,7 +64,9 @@ EOF
-* @"output_of"@ indicates that the @output@ of the @do_hash@ component is connected to the @"input"@ of @do_filter@. This is a _dependency_. Arvados uses the dependencies between jobs to automatically determine the correct order to run the jobs.
+* @"output_of"@ indicates that the @output@ of the @do_hash@ component should be used as the @"input"@ of @do_filter@. Arvados uses these dependencies between jobs to automatically determine the correct order to run them.
+
+(Your shell should automatically fill in @$USER@ with your login name. The JSON that gets saved should have @"repository"@ pointed at your personal Git repository.)
Now, use @arv pipeline_template create@ to register your pipeline template in Arvados:
@@ -73,4 +75,6 @@ Now, use @arv pipeline_template create@ to register your pipeline template in Ar
-Your new pipeline template will appear on the Workbench "Compute %(rarr)→% Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_instances page.
+Your new pipeline template will appear on the Workbench "Compute %(rarr)→% Pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates page.
+
+For more information and examples for writing pipelines, see the "pipeline template reference":{{site.baseurl}}/api/schema/PipelineTemplate.html