X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/d7db1f0877015228835fac67d4ad08789d39c520..f44a15adce692614ecb816dbe2d0205704d9a4ab:/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go?ds=inline diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go index d322b0f3f6..3c89103f38 100644 --- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go +++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm.go @@ -164,6 +164,17 @@ func checkSqueueForOrphans(dispatcher *dispatch.Dispatcher, sqCheck *SqueueCheck } } +func niceness(priority int) int { + if priority > 1000 { + priority = 1000 + } + if priority < 0 { + priority = 0 + } + // Niceness range 1-10000 + return (1000 - priority) * 10 +} + // sbatchCmd func sbatchFunc(container arvados.Container) *exec.Cmd { mem := int64(math.Ceil(float64(container.RuntimeConstraints.RAM+container.RuntimeConstraints.KeepCacheRAM) / float64(1048576))) @@ -182,6 +193,7 @@ func sbatchFunc(container arvados.Container) *exec.Cmd { sbatchArgs = append(sbatchArgs, fmt.Sprintf("--mem=%d", mem)) sbatchArgs = append(sbatchArgs, fmt.Sprintf("--cpus-per-task=%d", container.RuntimeConstraints.VCPUs)) sbatchArgs = append(sbatchArgs, fmt.Sprintf("--tmp=%d", disk)) + sbatchArgs = append(sbatchArgs, fmt.Sprintf("--nice=%d", niceness(container.Priority))) if len(container.SchedulingParameters.Partitions) > 0 { sbatchArgs = append(sbatchArgs, fmt.Sprintf("--partition=%s", strings.Join(container.SchedulingParameters.Partitions, ","))) } @@ -194,9 +206,15 @@ func scancelFunc(container arvados.Container) *exec.Cmd { return exec.Command("scancel", "--name="+container.UUID) } +// scontrolCmd +func scontrolFunc(container arvados.Container) *exec.Cmd { + return exec.Command("scontrol", "update", "JobName="+container.UUID, fmt.Sprintf("Nice=%d", niceness(container.Priority))) +} + // Wrap these so that they can be overridden by tests var sbatchCmd = sbatchFunc var scancelCmd = scancelFunc +var scontrolCmd = scontrolFunc // Submit job to slurm using sbatch. func submit(dispatcher *dispatch.Dispatcher, container arvados.Container, crunchRunCommand []string) error { @@ -204,7 +222,12 @@ func submit(dispatcher *dispatch.Dispatcher, container arvados.Container, crunch // Send a tiny script on stdin to execute the crunch-run // command (slurm requires this to be a #! script) - cmd.Stdin = strings.NewReader(execScript(append(crunchRunCommand, container.UUID))) + + // append() here avoids modifying crunchRunCommand's + // underlying array, which is shared with other goroutines. + args := append([]string(nil), crunchRunCommand...) + args = append(args, container.UUID) + cmd.Stdin = strings.NewReader(execScript(args)) var stdout, stderr bytes.Buffer cmd.Stdout = &stdout @@ -290,6 +313,10 @@ func run(disp *dispatch.Dispatcher, ctr arvados.Container, status <-chan arvados } else if updated.Priority == 0 { log.Printf("Container %s has state %q, priority %d: cancel slurm job", ctr.UUID, updated.State, updated.Priority) scancel(ctr) + } else if niceness(updated.Priority) != sqCheck.GetNiceness(ctr.UUID) && sqCheck.GetNiceness(ctr.UUID) != -1 { + // dynamically adjust priority + log.Printf("Container priority %v != %v", niceness(updated.Priority), sqCheck.GetNiceness(ctr.UUID)) + scontrolUpdate(updated) } } } @@ -310,6 +337,21 @@ func scancel(ctr arvados.Container) { } } +func scontrolUpdate(ctr arvados.Container) { + sqCheck.L.Lock() + cmd := scontrolCmd(ctr) + msg, err := cmd.CombinedOutput() + sqCheck.L.Unlock() + + if err != nil { + log.Printf("%q %q: %s %q", cmd.Path, cmd.Args, err, msg) + time.Sleep(time.Second) + } else if sqCheck.HasUUID(ctr.UUID) { + log.Printf("Container %s priority is now %v, niceness is now %v", + ctr.UUID, ctr.Priority, sqCheck.GetNiceness(ctr.UUID)) + } +} + func readConfig(dst interface{}, path string) error { err := config.LoadFile(dst, path) if err != nil && os.IsNotExist(err) && path == defaultConfigPath {