X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/d77c4cc58d393c48ce46b987f6eada7c7cc381c6..9cb3552d964d162d6eacff40435650440bc6f692:/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go

diff --git a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
index be347e428b..39ec15dd0e 100644
--- a/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
+++ b/services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go
@@ -3,12 +3,13 @@ package main
 import (
 	"bytes"
 	"fmt"
+	"git.curoverse.com/arvados.git/sdk/go/arvados"
 	"git.curoverse.com/arvados.git/sdk/go/arvadosclient"
 	"git.curoverse.com/arvados.git/sdk/go/arvadostest"
 	"git.curoverse.com/arvados.git/sdk/go/dispatch"
 	"io"
+	"io/ioutil"
 	"log"
-	"math"
 	"net/http"
 	"net/http/httptest"
 	"os"
@@ -58,14 +59,59 @@ func (s *MockArvadosServerSuite) TearDownTest(c *C) {
 }
 
 func (s *TestSuite) TestIntegrationNormal(c *C) {
-	s.integrationTest(c, false)
+	container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
+		[]string(nil),
+		func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
+			dispatcher.UpdateState(container.UUID, dispatch.Running)
+			time.Sleep(3 * time.Second)
+			dispatcher.UpdateState(container.UUID, dispatch.Complete)
+		})
+	c.Check(container.State, Equals, arvados.ContainerStateComplete)
+}
+
+func (s *TestSuite) TestIntegrationCancel(c *C) {
+
+	// Override sbatchCmd
+	var scancelCmdLine []string
+	defer func(orig func(arvados.Container) *exec.Cmd) {
+		scancelCmd = orig
+	}(scancelCmd)
+	scancelCmd = func(container arvados.Container) *exec.Cmd {
+		scancelCmdLine = scancelFunc(container).Args
+		return exec.Command("echo")
+	}
+
+	container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
+		[]string(nil),
+		func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
+			dispatcher.UpdateState(container.UUID, dispatch.Running)
+			time.Sleep(1 * time.Second)
+			dispatcher.Arv.Update("containers", container.UUID,
+				arvadosclient.Dict{
+					"container": arvadosclient.Dict{"priority": 0}},
+				nil)
+		})
+	c.Check(container.State, Equals, arvados.ContainerStateCancelled)
+	c.Check(scancelCmdLine, DeepEquals, []string{"scancel", "--name=zzzzz-dz642-queuedcontainer"})
 }
 
 func (s *TestSuite) TestIntegrationMissingFromSqueue(c *C) {
-	s.integrationTest(c, true)
+	container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo") }, []string{"sbatch", "--share",
+		fmt.Sprintf("--job-name=%s", "zzzzz-dz642-queuedcontainer"),
+		fmt.Sprintf("--mem-per-cpu=%d", 2862),
+		fmt.Sprintf("--cpus-per-task=%d", 4)},
+		func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
+			dispatcher.UpdateState(container.UUID, dispatch.Running)
+			time.Sleep(3 * time.Second)
+			dispatcher.UpdateState(container.UUID, dispatch.Complete)
+		})
+	c.Check(container.State, Equals, arvados.ContainerStateCancelled)
 }
 
-func (s *TestSuite) integrationTest(c *C, missingFromSqueue bool) {
+func (s *TestSuite) integrationTest(c *C,
+	newSqueueCmd func() *exec.Cmd,
+	sbatchCmdComps []string,
+	runContainer func(*dispatch.Dispatcher, arvados.Container)) arvados.Container {
 	arvadostest.ResetEnv()
 
 	arv, err := arvadosclient.MakeArvadosClient()
@@ -74,10 +120,10 @@ func (s *TestSuite) integrationTest(c *C, missingFromSqueue bool) {
 	var sbatchCmdLine []string
 
 	// Override sbatchCmd
-	defer func(orig func(dispatch.Container) *exec.Cmd) {
+	defer func(orig func(arvados.Container) *exec.Cmd) {
 		sbatchCmd = orig
 	}(sbatchCmd)
-	sbatchCmd = func(container dispatch.Container) *exec.Cmd {
+	sbatchCmd = func(container arvados.Container) *exec.Cmd {
 		sbatchCmdLine = sbatchFunc(container).Args
 		return exec.Command("sh")
 	}
@@ -86,38 +132,27 @@ func (s *TestSuite) integrationTest(c *C, missingFromSqueue bool) {
 	defer func(orig func() *exec.Cmd) {
 		squeueCmd = orig
 	}(squeueCmd)
-	squeueCmd = func() *exec.Cmd {
-		if missingFromSqueue {
-			return exec.Command("echo")
-		} else {
-			return exec.Command("echo", "zzzzz-dz642-queuedcontainer")
-		}
-	}
+	squeueCmd = newSqueueCmd
 
 	// There should be no queued containers now
 	params := arvadosclient.Dict{
-		"filters": [][]string{[]string{"state", "=", "Queued"}},
+		"filters": [][]string{{"state", "=", "Queued"}},
 	}
-	var containers dispatch.ContainerList
+	var containers arvados.ContainerList
 	err = arv.List("containers", params, &containers)
 	c.Check(err, IsNil)
 	c.Check(len(containers.Items), Equals, 1)
 
-	echo := "echo"
-	crunchRunCommand = &echo
+	theConfig.CrunchRunCommand = []string{"echo"}
 
 	doneProcessing := make(chan struct{})
 	dispatcher := dispatch.Dispatcher{
 		Arv:          arv,
 		PollInterval: time.Duration(1) * time.Second,
 		RunContainer: func(dispatcher *dispatch.Dispatcher,
-			container dispatch.Container,
-			status chan dispatch.Container) {
-			go func() {
-				dispatcher.UpdateState(container.UUID, dispatch.Running)
-				time.Sleep(3 * time.Second)
-				dispatcher.UpdateState(container.UUID, dispatch.Complete)
-			}()
+			container arvados.Container,
+			status chan arvados.Container) {
+			go runContainer(dispatcher, container)
 			run(dispatcher, container, status)
 			doneProcessing <- struct{}{}
 		},
@@ -130,20 +165,7 @@ func (s *TestSuite) integrationTest(c *C, missingFromSqueue bool) {
 
 	squeueUpdater.Done()
 
-	item := containers.Items[0]
-	sbatchCmdComps := []string{"sbatch", "--share", "--parsable",
-		fmt.Sprintf("--job-name=%s", item.UUID),
-		fmt.Sprintf("--mem-per-cpu=%d", int(math.Ceil(float64(item.RuntimeConstraints["ram"])/float64(item.RuntimeConstraints["vcpus"]*1048576)))),
-		fmt.Sprintf("--cpus-per-task=%d", int(item.RuntimeConstraints["vcpus"])),
-		fmt.Sprintf("--priority=%d", item.Priority)}
-
-	if missingFromSqueue {
-		// not in squeue when run() started, so it will have called sbatch
-		c.Check(sbatchCmdLine, DeepEquals, sbatchCmdComps)
-	} else {
-		// already in squeue when run() started, will have just monitored it instead
-		c.Check(sbatchCmdLine, DeepEquals, []string(nil))
-	}
+	c.Check(sbatchCmdLine, DeepEquals, sbatchCmdComps)
 
 	// There should be no queued containers now
 	err = arv.List("containers", params, &containers)
@@ -151,17 +173,13 @@ func (s *TestSuite) integrationTest(c *C, missingFromSqueue bool) {
 	c.Check(len(containers.Items), Equals, 0)
 
 	// Previously "Queued" container should now be in "Complete" state
-	var container dispatch.Container
+	var container arvados.Container
 	err = arv.Get("containers", "zzzzz-dz642-queuedcontainer", nil, &container)
 	c.Check(err, IsNil)
-	if missingFromSqueue {
-		c.Check(container.State, Equals, "Cancelled")
-	} else {
-		c.Check(container.State, Equals, "Complete")
-	}
+	return container
 }
 
-func (s *MockArvadosServerSuite) Test_APIErrorGettingContainers(c *C) {
+func (s *MockArvadosServerSuite) TestAPIErrorGettingContainers(c *C) {
 	apiStubResponses := make(map[string]arvadostest.StubResponse)
 	apiStubResponses["/arvados/v1/api_client_authorizations/current"] = arvadostest.StubResponse{200, `{"uuid":"` + arvadostest.Dispatch1AuthUUID + `"}`}
 	apiStubResponses["/arvados/v1/containers"] = arvadostest.StubResponse{500, string(`{}`)}
@@ -187,15 +205,15 @@ func testWithServerStub(c *C, apiStubResponses map[string]arvadostest.StubRespon
 	log.SetOutput(io.MultiWriter(buf, os.Stderr))
 	defer log.SetOutput(os.Stderr)
 
-	crunchRunCommand = &crunchCmd
+	theConfig.CrunchRunCommand = []string{crunchCmd}
 
 	doneProcessing := make(chan struct{})
 	dispatcher := dispatch.Dispatcher{
 		Arv:          arv,
 		PollInterval: time.Duration(1) * time.Second,
 		RunContainer: func(dispatcher *dispatch.Dispatcher,
-			container dispatch.Container,
-			status chan dispatch.Container) {
+			container arvados.Container,
+			status chan arvados.Container) {
 			go func() {
 				time.Sleep(1 * time.Second)
 				dispatcher.UpdateState(container.UUID, dispatch.Running)
@@ -218,3 +236,82 @@ func testWithServerStub(c *C, apiStubResponses map[string]arvadostest.StubRespon
 
 	c.Check(buf.String(), Matches, `(?ms).*`+expected+`.*`)
 }
+
+func (s *MockArvadosServerSuite) TestNoSuchConfigFile(c *C) {
+	var config Config
+	err := readConfig(&config, "/nosuchdir89j7879/8hjwr7ojgyy7")
+	c.Assert(err, NotNil)
+}
+
+func (s *MockArvadosServerSuite) TestBadSbatchArgsConfig(c *C) {
+	var config Config
+
+	tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+	c.Check(err, IsNil)
+	defer os.Remove(tmpfile.Name())
+
+	_, err = tmpfile.Write([]byte(`{"SbatchArguments": "oops this is not a string array"}`))
+	c.Check(err, IsNil)
+
+	err = readConfig(&config, tmpfile.Name())
+	c.Assert(err, NotNil)
+}
+
+func (s *MockArvadosServerSuite) TestNoSuchArgInConfigIgnored(c *C) {
+	var config Config
+
+	tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+	c.Check(err, IsNil)
+	defer os.Remove(tmpfile.Name())
+
+	_, err = tmpfile.Write([]byte(`{"NoSuchArg": "Nobody loves me, not one tiny hunk."}`))
+	c.Check(err, IsNil)
+
+	err = readConfig(&config, tmpfile.Name())
+	c.Assert(err, IsNil)
+	c.Check(0, Equals, len(config.SbatchArguments))
+}
+
+func (s *MockArvadosServerSuite) TestReadConfig(c *C) {
+	var config Config
+
+	tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+	c.Check(err, IsNil)
+	defer os.Remove(tmpfile.Name())
+
+	args := []string{"--arg1=v1", "--arg2", "--arg3=v3"}
+	argsS := `{"SbatchArguments": ["--arg1=v1",  "--arg2", "--arg3=v3"]}`
+	_, err = tmpfile.Write([]byte(argsS))
+	c.Check(err, IsNil)
+
+	err = readConfig(&config, tmpfile.Name())
+	c.Assert(err, IsNil)
+	c.Check(3, Equals, len(config.SbatchArguments))
+	c.Check(args, DeepEquals, config.SbatchArguments)
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithNoConfigArgs(c *C) {
+	testSbatchFuncWithArgs(c, nil)
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithEmptyConfigArgs(c *C) {
+	testSbatchFuncWithArgs(c, []string{})
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithConfigArgs(c *C) {
+	testSbatchFuncWithArgs(c, []string{"--arg1=v1", "--arg2"})
+}
+
+func testSbatchFuncWithArgs(c *C, args []string) {
+	theConfig.SbatchArguments = append(theConfig.SbatchArguments, args...)
+
+	container := arvados.Container{UUID: "123", RuntimeConstraints: arvados.RuntimeConstraints{RAM: 1000000, VCPUs: 2}}
+	sbatchCmd := sbatchFunc(container)
+
+	var expected []string
+	expected = append(expected, "sbatch", "--share")
+	expected = append(expected, theConfig.SbatchArguments...)
+	expected = append(expected, "--job-name=123", "--mem-per-cpu=1", "--cpus-per-task=2")
+
+	c.Check(sbatchCmd.Args, DeepEquals, expected)
+}