X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/d10f3f21de0ad0871ab0d36ca8289a38e17e1846..caf56e922b9caaa9a65332dc6bf3a36bd8fea48f:/sdk/cwl/arvados_cwl/arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index e8e2a51131..014e1b94aa 100644
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -330,7 +330,7 @@ class RunnerContainer(Runner):
                 "portable_data_hash": "%s" % workflowcollection
             }
         else:
-            packed = packed_workflow(self.arvrunner, self.tool)
+            packed = packed_workflow(self.arvrunner, self.tool, self.merged_map)
             workflowpath = "/var/lib/cwl/workflow.json#main"
             container_req["mounts"]["/var/lib/cwl/workflow.json"] = {
                 "kind": "json",
@@ -339,6 +339,7 @@ class RunnerContainer(Runner):
             if self.tool.tool.get("id", "").startswith("arvwf:"):
                 container_req["properties"]["template_uuid"] = self.tool.tool["id"][6:33]
 
+
         command = ["arvados-cwl-runner", "--local", "--api=containers", "--no-log-timestamps"]
         if self.output_name:
             command.append("--output-name=" + self.output_name)