X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/d084ca24b06c598271844d2ba4c8c40f251c0999..2e74236fa27822addd856f194befc28382990ce0:/sdk/cwl/test_with_arvbox.sh

diff --git a/sdk/cwl/test_with_arvbox.sh b/sdk/cwl/test_with_arvbox.sh
index 236658c1f1..354d6f0e56 100755
--- a/sdk/cwl/test_with_arvbox.sh
+++ b/sdk/cwl/test_with_arvbox.sh
@@ -12,7 +12,11 @@ fi
 reset_container=1
 leave_running=0
 config=dev
+devcwl=0
 tag="latest"
+pythoncmd=python3
+suite=conformance
+runapi=containers
 
 while test -n "$1" ; do
     arg="$1"
@@ -33,8 +37,28 @@ while test -n "$1" ; do
             tag=$2
             shift ; shift
             ;;
+        --build)
+            build=1
+            shift
+            ;;
+        --devcwl)
+            devcwl=1
+            shift
+            ;;
+        --pythoncmd)
+            pythoncmd=$2
+            shift ; shift
+            ;;
+        --suite)
+            suite=$2
+            shift ; shift
+            ;;
+	--api)
+	    runapi=$2
+            shift ; shift
+            ;;
         -h|--help)
-            echo "$0 [--no-reset-container] [--leave-running] [--config dev|localdemo] [--tag docker_tag]"
+            echo "$0 [--no-reset-container] [--leave-running] [--config dev|localdemo] [--tag docker_tag] [--build] [--pythoncmd python(2|3)] [--suite (integration|conformance-v1.0|conformance-*)]"
             exit
             ;;
         *)
@@ -47,6 +71,10 @@ if test -z "$ARVBOX_CONTAINER" ; then
    export ARVBOX_CONTAINER=cwltest
 fi
 
+if test "$suite" = "conformance" ; then
+  suite=conformance-v1.0
+fi
+
 if test $reset_container = 1 ; then
     arvbox stop
     docker rm $ARVBOX_CONTAINER
@@ -55,54 +83,96 @@ fi
 
 arvbox start $config $tag
 
+# Copy the integration test suite from our local arvados clone instead
+# of using the one inside the container, so we can make changes to the
+# integration tests without necessarily having to rebuilding the
+# container image.
+docker cp -L $(readlink -f $(dirname $0)/tests) $ARVBOX_CONTAINER:/usr/src/arvados/sdk/cwl
+
 arvbox pipe <<EOF
 set -eu -o pipefail
 
 . /usr/local/lib/arvbox/common.sh
 
+export PYCMD=$pythoncmd
+
 if test $config = dev ; then
   cd /usr/src/arvados/sdk/cwl
-  python setup.py sdist
+  \$PYCMD setup.py sdist
   pip_install \$(ls -r dist/arvados-cwl-runner-*.tar.gz | head -n1)
 fi
 
-pip install cwltest
+set -x
+
+if [ "\$PYCMD" = "python3" ]; then
+    pip3 install cwltest
+else
+    pip install cwltest
+fi
 
 mkdir -p /tmp/cwltest
 cd /tmp/cwltest
-if ! test -d common-workflow-language ; then
-  git clone https://github.com/common-workflow-language/common-workflow-language.git
+
+if [[ "$suite" = "conformance-v1.0" ]] ; then
+   if ! test -d common-workflow-language ; then
+     git clone https://github.com/common-workflow-language/common-workflow-language.git
+   fi
+   cd common-workflow-language
+elif [[ "$suite" =~ conformance-(.*) ]] ; then
+   version=\${BASH_REMATCH[1]}
+   if ! test -d cwl-\${version} ; then
+     git clone https://github.com/common-workflow-language/cwl-\${version}.git
+   fi
+   cd cwl-\${version}
+   git checkout \${version}.0
+elif [[ "$suite" != "integration" ]] ; then
+   echo "ERROR: unknown suite '$suite'"
+   exit 1
 fi
-cd common-workflow-language
-git pull
+
+#if [[ "$suite" != "integration" ]] ; then
+#  git pull
+#fi
+
 export ARVADOS_API_HOST=localhost:8000
 export ARVADOS_API_HOST_INSECURE=1
-export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
-
+export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados-arvbox/superuser_token)
 
-if test "$tag" = "latest" ; then
-  arv-keepdocker --pull arvados/jobs $tag
-else
-  jobsimg=\$(curl http://versions.arvados.org/v1/commit/$tag | python -c "import json; import sys; sys.stdout.write(json.load(sys.stdin)['Versions']['Docker']['arvados/jobs'])")
-  arv-keepdocker --pull arvados/jobs $jobsimg
-  docker tag -f arvados/jobs:$jobsimg arvados/jobs:latest
-  arv-keepdocker arvados/jobs latest
+if test -n "$build" ; then
+  /usr/src/arvados/build/build-dev-docker-jobs-image.sh
 fi
 
-cat >/tmp/cwltest/arv-cwl-jobs <<EOF2
-#!/bin/sh
-exec arvados-cwl-runner --api=jobs \\\$@
-EOF2
-chmod +x /tmp/cwltest/arv-cwl-jobs
+EXTRA=--compute-checksum
 
-cat >/tmp/cwltest/arv-cwl-containers <<EOF2
-#!/bin/sh
-exec arvados-cwl-runner --api=containers \\\$@
-EOF2
-chmod +x /tmp/cwltest/arv-cwl-containers
+if [[ $devcwl -eq 1 ]] ; then
+   EXTRA="\$EXTRA --enable-dev"
+fi
 
 env
-exec ./run_test.sh EXTRA=--compute-checksum $@
+
+# Skip docker_entrypoint test because it fails on singularity
+#
+# Skip timelimit_invalid_wf test because the timeout is very short
+# (5s) and singularity containers loading off an arv-mount take too long
+# to start and get incorrectly terminated
+#
+# Skip test 199 in the v1.1 suite because it has different output
+# depending on whether there is a pty associated with stdout (fixed in
+# the v1.2 suite)
+#
+# Skip test 307 in the v1.2 suite because the test relied on
+# secondary file behavior of cwltool that wasn't actually correct to specification
+
+if [[ "$suite" = "integration" ]] ; then
+   cd /usr/src/arvados/sdk/cwl/tests
+   exec ./arvados-tests.sh $@
+elif [[ "$suite" = "conformance-v1.2" ]] ; then
+   exec cwltest --tool arvados-cwl-runner --test conformance_tests.yaml -Sdocker_entrypoint,timelimit_invalid_wf -N307 $@ -- \$EXTRA
+elif [[ "$suite" = "conformance-v1.1" ]] ; then
+   exec cwltest --tool arvados-cwl-runner --test conformance_tests.yaml -Sdocker_entrypoint,timelimit_invalid_wf -N199 $@ -- \$EXTRA
+elif [[ "$suite" = "conformance-v1.0" ]] ; then
+   exec cwltest --tool arvados-cwl-runner --test v1.0/conformance_test_v1.0.yaml -Sdocker_entrypoint $@ -- \$EXTRA
+fi
 EOF
 
 CODE=$?