X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/cc556a86ae6a83ba4cf5b7125fbabe704207ae60..a8b7a1dc652420d2204f2fbaef86cdd02bdafd9a:/doc/_config.yml

diff --git a/doc/_config.yml b/doc/_config.yml
index a64ff8aced..9917b0fdf1 100644
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -11,7 +11,10 @@
 # $ rake generate baseurl=/example arvados_api_host=example.com
 
 baseurl:
+current_version:
+all_versions:
 arvados_api_host: localhost
+arvados_cluster_uuid: local
 arvados_workbench_host: http://localhost
 
 exclude: ["Rakefile", "tmp", "vendor"]
@@ -24,6 +27,7 @@ navbar:
     - Run a workflow using Workbench:
       - user/getting_started/workbench.html.textile.liquid
       - user/tutorials/tutorial-workflow-workbench.html.textile.liquid
+      - user/composer/composer.html.textile.liquid
     - Access an Arvados virtual machine:
       - user/getting_started/vm-login-with-webshell.html.textile.liquid
       - user/getting_started/ssh-access-unix.html.textile.liquid
@@ -33,22 +37,27 @@ navbar:
     - Working with data sets:
       - user/tutorials/tutorial-keep.html.textile.liquid
       - user/tutorials/tutorial-keep-get.html.textile.liquid
-      - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
-      - user/tutorials/tutorial-keep-mount.html.textile.liquid
+      - user/tutorials/tutorial-keep-mount-gnu-linux.html.textile.liquid
+      - user/tutorials/tutorial-keep-mount-os-x.html.textile.liquid
+      - user/tutorials/tutorial-keep-mount-windows.html.textile.liquid
       - user/topics/keep.html.textile.liquid
+      - user/tutorials/tutorial-keep-collection-lifecycle.html.textile.liquid
       - user/topics/arv-copy.html.textile.liquid
       - user/topics/storage-classes.html.textile.liquid
-    - Running workflows at the command line:
-      - user/cwl/cwl-runner.html.textile.liquid
-      - user/cwl/cwl-run-options.html.textile.liquid
+      - user/topics/collection-versioning.html.textile.liquid
     - Working with git repositories:
       - user/tutorials/add-new-repository.html.textile.liquid
       - user/tutorials/git-arvados-guide.html.textile.liquid
+    - Running workflows at the command line:
+      - user/cwl/cwl-runner.html.textile.liquid
+      - user/cwl/cwl-run-options.html.textile.liquid
     - Develop an Arvados workflow:
       - user/tutorials/intro-crunch.html.textile.liquid
       - user/tutorials/writing-cwl-workflow.html.textile.liquid
       - user/cwl/cwl-style.html.textile.liquid
+      - user/cwl/federated-workflows.html.textile.liquid
       - user/cwl/cwl-extensions.html.textile.liquid
+      - user/cwl/cwl-versions.html.textile.liquid
       - user/topics/arv-docker.html.textile.liquid
     - Reference:
       - user/topics/link-accounts.html.textile.liquid
@@ -58,18 +67,6 @@ navbar:
       - user/copying/agpl-3.0.html
       - user/copying/LICENSE-2.0.html
       - user/copying/by-sa-3.0.html
-    - Obsolete documentation:
-      - user/topics/running-pipeline-command-line.html.textile.liquid
-      - user/topics/arv-run.html.textile.liquid
-      - user/tutorials/running-external-program.html.textile.liquid
-      - user/topics/crunch-tools-overview.html.textile.liquid
-      - user/tutorials/tutorial-firstscript.html.textile.liquid
-      - user/tutorials/tutorial-submit-job.html.textile.liquid
-      - user/topics/tutorial-parallel.html.textile.liquid
-      - user/topics/run-command.html.textile.liquid
-      - user/reference/job-pipeline-ref.html.textile.liquid
-      - user/examples/crunch-examples.html.textile.liquid
-      - user/topics/tutorial-trait-search.html.textile.liquid
   sdk:
     - Overview:
       - sdk/index.html.textile.liquid
@@ -80,7 +77,6 @@ navbar:
       - sdk/python/arvados-fuse.html.textile.liquid
       - sdk/python/events.html.textile.liquid
       - sdk/python/cookbook.html.textile.liquid
-      - sdk/python/crunch-utility-libraries.html.textile.liquid
     - CLI:
       - sdk/cli/install.html.textile.liquid
       - sdk/cli/index.html.textile.liquid
@@ -92,15 +88,19 @@ navbar:
     - R:
       - sdk/R/index.html.md
       - sdk/R/arvados/index.html.textile.liquid
-    - Perl:
-      - sdk/perl/index.html.textile.liquid
-      - sdk/perl/example.html.textile.liquid
     - Ruby:
       - sdk/ruby/index.html.textile.liquid
       - sdk/ruby/example.html.textile.liquid
-    - Java:
+    - Java v2:
+      - sdk/java-v2/index.html.textile.liquid
+      - sdk/java-v2/example.html.textile.liquid
+      - sdk/java-v2/javadoc.html.textile.liquid
+    - Java v1:
       - sdk/java/index.html.textile.liquid
       - sdk/java/example.html.textile.liquid
+    - Perl:
+      - sdk/perl/index.html.textile.liquid
+      - sdk/perl/example.html.textile.liquid
   api:
     - Concepts:
       - api/index.html.textile.liquid
@@ -114,6 +114,7 @@ navbar:
       - api/methods/authorized_keys.html.textile.liquid
       - api/methods/groups.html.textile.liquid
       - api/methods/users.html.textile.liquid
+      - api/methods/user_agreements.html.textile.liquid
     - System resources:
       - api/methods/keep_services.html.textile.liquid
       - api/methods/links.html.textile.liquid
@@ -128,13 +129,15 @@ navbar:
       - api/methods/container_requests.html.textile.liquid
       - api/methods/containers.html.textile.liquid
       - api/methods/workflows.html.textile.liquid
-    - Jobs engine (deprecated):
+    - Management (admin/system):
+      - api/dispatch.html.textile.liquid
+    - Jobs engine (legacy):
       - api/crunch-scripts.html.textile.liquid
       - api/methods/jobs.html.textile.liquid
       - api/methods/job_tasks.html.textile.liquid
       - api/methods/pipeline_instances.html.textile.liquid
       - api/methods/pipeline_templates.html.textile.liquid
-    - Metadata for bioinformatics:
+    - Metadata for bioinformatics (deprecated):
       - api/methods/humans.html.textile.liquid
       - api/methods/specimens.html.textile.liquid
       - api/methods/traits.html.textile.liquid
@@ -144,31 +147,59 @@ navbar:
       - api/storage.html.textile.liquid
       - api/execution.html.textile.liquid
       - api/permission-model.html.textile.liquid
+      - architecture/federation.html.textile.liquid
   admin:
     - Topics:
       - admin/index.html.textile.liquid
-      - admin/upgrading.html.textile.liquid
-      - install/cheat_sheet.html.textile.liquid
+    - Users and Groups:
+      - admin/user-management.html.textile.liquid
+      - admin/reassign-ownership.html.textile.liquid
+      - admin/user-management-cli.html.textile.liquid
+      - admin/group-management.html.textile.liquid
+      - admin/federation.html.textile.liquid
+      - admin/merge-remote-account.html.textile.liquid
+      - admin/migrating-providers.html.textile.liquid
       - user/topics/arvados-sync-groups.html.textile.liquid
+      - admin/scoped-tokens.html.textile.liquid
+    - Monitoring:
+      - admin/logging.html.textile.liquid
+      - admin/metrics.html.textile.liquid
+      - admin/health-checks.html.textile.liquid
+      - admin/management-token.html.textile.liquid
+    - Data Management:
+      - admin/collection-versioning.html.textile.liquid
+      - admin/collection-managed-properties.html.textile.liquid
+      - admin/keep-balance.html.textile.liquid
+      - admin/controlling-container-reuse.html.textile.liquid
+      - admin/logs-table-management.html.textile.liquid
+      - admin/workbench2-vocabulary.html.textile.liquid
       - admin/storage-classes.html.textile.liquid
-      - admin/migrating-providers.html.textile.liquid
-      - admin/merge-remote-account.html.textile.liquid
+    - Cloud:
+      - admin/spot-instances.html.textile.liquid
+      - admin/cloudtest.html.textile.liquid
+    - Other:
       - install/migrate-docker19.html.textile.liquid
+      - admin/upgrade-crunch2.html.textile.liquid
   installguide:
     - Overview:
       - install/index.html.textile.liquid
     - Docker quick start:
       - install/arvbox.html.textile.liquid
+    - Arvados on Kubernetes:
+      - install/arvados-on-kubernetes.html.textile.liquid
+      - install/arvados-on-kubernetes-minikube.html.textile.liquid
+      - install/arvados-on-kubernetes-GKE.html.textile.liquid
     - Manual installation:
       - install/install-manual-prerequisites.html.textile.liquid
-      - install/install-postgresql.html.textile.liquid
-      - install/install-sso.html.textile.liquid
+      - install/packages.html.textile.liquid
+      - admin/upgrading.html.textile.liquid
+    - Configuration:
+      - install/config.html.textile.liquid
+      - admin/config-migration.html.textile.liquid
+      - admin/config.html.textile.liquid
+    - Core:
       - install/install-api-server.html.textile.liquid
-      - install/install-ws.html.textile.liquid
-      - install/install-arv-git-httpd.html.textile.liquid
-      - install/install-workbench-app.html.textile.liquid
-      - install/install-shell-server.html.textile.liquid
-      - install/create-standard-objects.html.textile.liquid
+    - Keep:
       - install/install-keepstore.html.textile.liquid
       - install/configure-fs-storage.html.textile.liquid
       - install/configure-s3-object-storage.html.textile.liquid
@@ -176,14 +207,25 @@ navbar:
       - install/install-keepproxy.html.textile.liquid
       - install/install-keep-web.html.textile.liquid
       - install/install-keep-balance.html.textile.liquid
-    - Containers API support on SLURM:
-      - install/crunch2-slurm/install-prerequisites.html.textile.liquid
-      - install/crunch2-slurm/install-slurm.html.textile.liquid
+    - User interface:
+      - install/setup-login.html.textile.liquid
+      - install/install-sso.html.textile.liquid
+      - install/install-workbench-app.html.textile.liquid
+      - install/install-workbench2-app.html.textile.liquid
+      - install/install-composer.html.textile.liquid
+    - Additional services:
+      - install/install-ws.html.textile.liquid
+      - install/install-arv-git-httpd.html.textile.liquid
+      - install/install-shell-server.html.textile.liquid
+    - Containers API:
       - install/crunch2-slurm/install-compute-node.html.textile.liquid
+      - install/install-jobs-image.html.textile.liquid
+      - install/install-dispatch-cloud.html.textile.liquid
       - install/crunch2-slurm/install-dispatch.html.textile.liquid
       - install/crunch2-slurm/install-test.html.textile.liquid
-      - install/install-nodemanager.html.textile.liquid
-      - install/install-compute-ping.html.textile.liquid
-    - Jobs API support (deprecated):
-      - install/install-crunch-dispatch.html.textile.liquid
-      - install/install-compute-node.html.textile.liquid
+    - External dependencies:
+      - install/install-postgresql.html.textile.liquid
+      - install/ruby.html.textile.liquid
+      - install/nginx.html.textile.liquid
+      - install/google-auth.html.textile.liquid
+      - install/install-docker.html.textile.liquid