X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/cc13e1f6081cf51216f137a2bb6dbd85d0c15d1b..8d9adcff3cfc57c775f136ef32dcad6b3860a5a3:/doc/user/tutorials/tutorial-keep.html.textile.liquid
diff --git a/doc/user/tutorials/tutorial-keep.html.textile.liquid b/doc/user/tutorials/tutorial-keep.html.textile.liquid
index 7146808c0d..53cdfe4a08 100644
--- a/doc/user/tutorials/tutorial-keep.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-keep.html.textile.liquid
@@ -3,14 +3,22 @@ layout: default
navsection: userguide
title: "Uploading data"
...
+{% comment %}
+Copyright (C) The Arvados Authors. All rights reserved.
-This tutorial describes how to to upload new Arvados data collections using the command line tool @arv keep put@.
+SPDX-License-Identifier: CC-BY-SA-3.0
+{% endcomment %}
+
+Arvados Data collections can be uploaded using either the @arv keep put@ command line tool or using Workbench.
+
+# "*Upload using command line tool*":#upload-using-command
+# "*Upload using Workbench*":#upload-using-workbench
notextile.
-{% include 'tutorial_expectations' %}
+h2(#upload-using-command). Upload using command line tool
-h2. Upload using command prompt
+{% include 'tutorial_expectations' %}
To upload a file to Keep using @arv keep put@:
@@ -21,9 +29,10 @@ qr1hi-4zz18-xxxxxxxxxxxxxxx
+
The output value @qr1hi-4zz18-xxxxxxxxxxxxxxx@ is the uuid of the Arvados collection created.
-The file used in this example is a freely available TSV file containing variant annotations from "Personal Genome Project (PGP)":http://www.pgp-hms.org participant "hu599905.":https://my.pgp-hms.org/profile/hu599905), downloadable "here":https://warehouse.pgp-hms.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2.
+Note: The file used in this example is a freely available TSV file containing variant annotations from the "Personal Genome Project (PGP)":http://www.pgp-hms.org participant "hu599905":https://my.pgp-hms.org/profile/hu599905), downloadable "here":https://warehouse.pgp-hms.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2. Alternatively, you can replace @var-GS000016015-ASM.tsv.bz2@ with the name of any file you have locally, or you could get the TSV file by "downloading it from Keep.":{{site.baseurl}}/user/tutorials/tutorial-keep-get.html
It is also possible to upload an entire directory with @arv keep put@:
@@ -45,9 +54,9 @@ In both examples, the @arv keep put@ command created a collection. The first col
h3. Locate your collection in Workbench
-Visit the Workbench *Dashboard*. Click on *Projects*
dropdown menu in the top navigation menu, select your *Home* project. Your newly uploaded collection should appear near the top of the *Data collections* tab. The collection locator printed by @arv keep put@ will appear under the *name* column.
+Visit the Workbench *Dashboard*. Click on *Projects*
dropdown menu in the top navigation menu, select your *Home* project. Your newly uploaded collection should appear near the top of the *Data collections* tab. The collection name printed by @arv keep put@ will appear under the *name* column.
-To move the collection to a different project, check the box at the left of the collection row. Pull down the *Selection...*
menu near the top of the page tab, and select *Move selected*. This will open a dialog box where you can select a destination project for the collection. Click a project, then finally the
Move button.
+To move the collection to a different project, check the box at the left of the collection row. Pull down the *Selection...*
menu near the top of the page tab, and select *Move selected...* button. This will open a dialog box where you can select a destination project for the collection. Click a project, then finally the
Move button.
!{display: block;margin-left: 25px;margin-right: auto;}{{ site.baseurl }}/images/workbench-move-selected.png!
@@ -55,11 +64,11 @@ Click on the *
Show* button next to the colle
notextile.
-h2. Upload using Workbench
+h2(#upload-using-workbench). Upload using Workbench
To upload using Workbench, visit the Workbench *Dashboard*. Click on *Projects*