X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/cbba74fcd57b7b81337d44c2e663ba317e6538de..0b19ca02c8387ff1eda4ccafb9bd0fda7b79c3b1:/sdk/cwl/tests/test_job.py diff --git a/sdk/cwl/tests/test_job.py b/sdk/cwl/tests/test_job.py index 21b72d17db..19ae93af25 100644 --- a/sdk/cwl/tests/test_job.py +++ b/sdk/cwl/tests/test_job.py @@ -6,6 +6,8 @@ import os import functools import cwltool.process +from schema_salad.ref_resolver import Loader + if not os.getenv('ARVADOS_DEBUG'): logging.getLogger('arvados.cwl-runner').setLevel(logging.WARN) logging.getLogger('arvados.arv-run').setLevel(logging.WARN) @@ -28,7 +30,8 @@ class TestJob(unittest.TestCase): "arguments": [{"valueFrom": "$(runtime.outdir)"}] } make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess, api_client=runner.api) - arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names, basedir="", make_fs_access=make_fs_access) + arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names, + basedir="", make_fs_access=make_fs_access, loader=Loader({})) arvtool.formatgraph = None for j in arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access): j.run() @@ -80,7 +83,8 @@ class TestJob(unittest.TestCase): "baseCommand": "ls" } make_fs_access=functools.partial(arvados_cwl.CollectionFsAccess, api_client=runner.api) - arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names, make_fs_access=make_fs_access) + arvtool = arvados_cwl.ArvadosCommandTool(runner, tool, work_api="jobs", avsc_names=avsc_names, + make_fs_access=make_fs_access, loader=Loader({})) arvtool.formatgraph = None for j in arvtool.job({}, mock.MagicMock(), basedir="", make_fs_access=make_fs_access): j.run()