X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/ca35c58c19b28dcdbbff71fe3da0ee16ca760673..0eb72b526bf8bbb011551ecf019f604e17a534f1:/services/api/script/salvage_collection.rb

diff --git a/services/api/script/salvage_collection.rb b/services/api/script/salvage_collection.rb
index 97eb6a8660..75b02e5767 100755
--- a/services/api/script/salvage_collection.rb
+++ b/services/api/script/salvage_collection.rb
@@ -1,112 +1,30 @@
 #!/usr/bin/env ruby
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
 
 # Take two input parameters: a collection uuid and reason
-# Get "src" collection with the given uuid
-# Create a new collection "dest" with:
-#   src.manifest_text as "invalid manifest_text.txt"
-#   Locators from src.manifest_text as "salvaged_data"
-# Update src collection:
-#   Set src.manifest_text to: ""
-#   Append to src.name: " (reason; salvaged data at dest.uuid)"
+# Get "src_collection" with the given uuid
+# Create a new collection with:
+#   src_collection.manifest_text as "invalid_manifest_text.txt"
+#   Locators from src_collection.manifest_text as "salvaged_data"
+# Update src_collection:
+#   Set src_collection.manifest_text to: ""
+#   Append to src_collection.name: " (reason; salvaged data at new_collection.uuid)"
 #   Set portable_data_hash to "d41d8cd98f00b204e9800998ecf8427e+0"
 
 require 'trollop'
+require './lib/salvage_collection'
+include SalvageCollection
 
 opts = Trollop::options do
   banner ''
   banner "Usage: salvage_collection.rb " +
     "{uuid} {reason}"
   banner ''
-  opt :uuid, <<-eos
-uuid of the collection to be salvaged.
-  eos
-  opt :reason, <<-eos
-Reason for salvaging.
-  eos
-end
-
-if ARGV.count < 1
-  Trollop::die "required uuid argument is missing"
-end
-
-uuid, reason = ARGV
-
-require File.dirname(__FILE__) + '/../config/environment'
-require 'arvados/keep'
-include ApplicationHelper
-require 'tempfile'
-
-def salvage_collection uuid, reason
-  act_as_system_user do
-    src = Collection.find_by_uuid uuid
-    if !src
-      puts "No collection found for #{uuid}"
-      return
-    end
-
-    begin
-      src_manifest_text = src.manifest_text || ''
-
-      # Get all the locators from the original manifest
-      locators = []
-      src_manifest_text.each_line do |line|
-        line.split(' ').each do |word|
-          if match = Keep::Locator::LOCATOR_REGEXP.match(word)
-            word = word.split('+')[0..1].join('+')  # get rid of any hints
-            locators << word
-          end
-        end
-      end
-      locators << 'd41d8cd98f00b204e9800998ecf8427e+0' if !locators.any?
-
-      # create new collection using 'arv-put' with original manifest_text as the data
-      temp_file = Tempfile.new('temp')
-      temp_file.write(src.manifest_text)
-
-      created = %x(arv-put --use-filename invalid_manifest_text.txt #{temp_file.path})
-
-      temp_file.close
-      temp_file.unlink
-
-      created.rstrip!
-      match = created.match HasUuid::UUID_REGEX
-      raise "uuid not found" if !match
-
-      # update this new collection manifest to reference all locators from the original manifest
-      new_collection = Collection.find_by_uuid created
-
-      new_manifest = new_collection['manifest_text']
-      new_manifest = new_manifest.gsub(/\+A[^+]*/, '')
-      total_size = 0
-      locators.each do |locator|
-        total_size += locator.split('+')[1].to_i
-      end
-      new_manifest += (". #{locators.join(' ')} 0:#{total_size}:salvaged_data\n")
-
-      new_collection.name = "salvaged from #{src.uuid}, #{src.portable_data_hash}"
-      new_collection.manifest_text = new_manifest
-      new_collection.portable_data_hash = Digest::MD5.hexdigest(new_manifest)
-
-      new_collection.save!
-
-      puts "Created collection for salvaged #{uuid} with uuid: #{created}  #{match}"
-    rescue => error
-      puts "Error creating collection for #{uuid}: #{error}"
-      return
-    end
-
-    begin
-      # update src collection name, pdh, and manifest_text
-      src.name = (src.name || '') + ' (' + (reason || '') + '; salvaged data at ' + created + ')'
-      src.manifest_text = ''
-      src.portable_data_hash = 'd41d8cd98f00b204e9800998ecf8427e+0'
-      src.save!
-      puts "Salvaged collection #{uuid}"
-    rescue => error
-      puts "Error salvaging collection #{uuid}: #{error}"
-    end
-  end
+  opt :uuid, "uuid of the collection to be salvaged.", type: :string, required: true
+  opt :reason, "Reason for salvaging.", type: :string, required: false
 end
 
 # Salvage the collection with the given uuid
-salvage_collection uuid, reason
+SalvageCollection.salvage_collection opts.uuid, opts.reason