X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/c7539c212173e4ce103ec8cc893f0c4f0a942ba3..324d0d6d115488d0ac7fea7aa1a6cff3dd16be0e:/sdk/cwl/tests/test_job.py diff --git a/sdk/cwl/tests/test_job.py b/sdk/cwl/tests/test_job.py index ae48238745..e74e000b60 100644 --- a/sdk/cwl/tests/test_job.py +++ b/sdk/cwl/tests/test_job.py @@ -1,6 +1,13 @@ -import unittest -import mock import arvados_cwl +import logging +import mock +import unittest +import os + +if not os.getenv('ARVADOS_DEBUG'): + logging.getLogger('arvados.cwl-runner').setLevel(logging.WARN) + logging.getLogger('arvados.arv-run').setLevel(logging.WARN) + class TestJob(unittest.TestCase): @@ -9,6 +16,8 @@ class TestJob(unittest.TestCase): def test_run(self): runner = mock.MagicMock() runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz" + runner.ignore_docker_for_reuse = False + tool = { "inputs": [], "outputs": [], @@ -18,32 +27,41 @@ class TestJob(unittest.TestCase): arvtool.formatgraph = None for j in arvtool.job({}, "", mock.MagicMock()): j.run() - runner.api.jobs().create.assert_called_with(body={ - 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz', - 'runtime_constraints': {}, - 'script_parameters': { - 'tasks': [{ - 'task.env': {'TMPDIR': '$(task.tmpdir)'}, - 'command': ['ls'] - }], - 'crunchrunner': arvados_cwl.crunchrunner_pdh + '/crunchrunner' - }, - 'script_version': 'master', - 'minimum_script_version': '9e5b98e8f5f4727856b53447191f9c06e3da2ba6', - 'repository': 'arvados', - 'script': 'crunchrunner', - 'runtime_constraints': { - 'min_cores_per_node': 1, - 'min_ram_mb_per_node': 1024, - 'min_scratch_mb_per_node': 2048 # tmpdirSize + outdirSize - } - }, find_or_create=True) + runner.api.jobs().create.assert_called_with( + body={ + 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz', + 'runtime_constraints': {}, + 'script_parameters': { + 'tasks': [{ + 'task.env': {'TMPDIR': '$(task.tmpdir)'}, + 'command': ['ls'] + }], + }, + 'script_version': 'master', + 'minimum_script_version': '9e5b98e8f5f4727856b53447191f9c06e3da2ba6', + 'repository': 'arvados', + 'script': 'crunchrunner', + 'runtime_constraints': { + 'docker_image': 'arvados/jobs', + 'min_cores_per_node': 1, + 'min_ram_mb_per_node': 1024, + 'min_scratch_mb_per_node': 2048 # tmpdirSize + outdirSize + } + }, + find_or_create=True, + filters=[['repository', '=', 'arvados'], + ['script', '=', 'crunchrunner'], + ['script_version', 'in git', '9e5b98e8f5f4727856b53447191f9c06e3da2ba6'], + ['docker_image_locator', 'in docker', 'arvados/jobs']] + ) # The test passes some fields in builder.resources # For the remaining fields, the defaults will apply: {'cores': 1, 'ram': 1024, 'outdirSize': 1024, 'tmpdirSize': 1024} def test_resource_requirements(self): runner = mock.MagicMock() runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz" + runner.ignore_docker_for_reuse = False + tool = { "inputs": [], "outputs": [], @@ -59,26 +77,32 @@ class TestJob(unittest.TestCase): arvtool.formatgraph = None for j in arvtool.job({}, "", mock.MagicMock()): j.run() - runner.api.jobs().create.assert_called_with(body={ - 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz', - 'runtime_constraints': {}, - 'script_parameters': { - 'tasks': [{ - 'task.env': {'TMPDIR': '$(task.tmpdir)'}, - 'command': ['ls'] - }], - 'crunchrunner': arvados_cwl.crunchrunner_pdh + '/crunchrunner' + runner.api.jobs().create.assert_called_with( + body={ + 'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz', + 'runtime_constraints': {}, + 'script_parameters': { + 'tasks': [{ + 'task.env': {'TMPDIR': '$(task.tmpdir)'}, + 'command': ['ls'] + }] }, 'script_version': 'master', - 'minimum_script_version': '9e5b98e8f5f4727856b53447191f9c06e3da2ba6', - 'repository': 'arvados', - 'script': 'crunchrunner', - 'runtime_constraints': { - 'min_cores_per_node': 3, - 'min_ram_mb_per_node': 3000, - 'min_scratch_mb_per_node': 5024 # tmpdirSize + outdirSize - } - }, find_or_create=True) + 'minimum_script_version': '9e5b98e8f5f4727856b53447191f9c06e3da2ba6', + 'repository': 'arvados', + 'script': 'crunchrunner', + 'runtime_constraints': { + 'docker_image': 'arvados/jobs', + 'min_cores_per_node': 3, + 'min_ram_mb_per_node': 3000, + 'min_scratch_mb_per_node': 5024 # tmpdirSize + outdirSize + } + }, + find_or_create=True, + filters=[['repository', '=', 'arvados'], + ['script', '=', 'crunchrunner'], + ['script_version', 'in git', '9e5b98e8f5f4727856b53447191f9c06e3da2ba6'], + ['docker_image_locator', 'in docker', 'arvados/jobs']]) @mock.patch("arvados.collection.Collection") def test_done(self, col): @@ -88,6 +112,7 @@ class TestJob(unittest.TestCase): runner.api = api runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz" runner.num_retries = 0 + runner.ignore_docker_for_reuse = False col().open.return_value = [] api.collections().list().execute.side_effect = ({"items": []},