X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/c41beef3142e9c3e15385b2ad76c2a0088ca6a20..82c23c04e3105dfd0d2167a53552df56b0a81785:/apps/workbench/app/helpers/provenance_helper.rb

diff --git a/apps/workbench/app/helpers/provenance_helper.rb b/apps/workbench/app/helpers/provenance_helper.rb
index 6d6ae5516c..1cdf53ae1e 100644
--- a/apps/workbench/app/helpers/provenance_helper.rb
+++ b/apps/workbench/app/helpers/provenance_helper.rb
@@ -6,46 +6,52 @@ module ProvenanceHelper
       @opts = opts
       @visited = {}
       @jobs = {}
+      @node_extra = {}
     end
 
     def self.collection_uuid(uuid)
-      m = /^([a-f0-9]{32}(\+[0-9]+)?)(\+.*)?$/.match(uuid.to_s)
+      m = CollectionsHelper.match(uuid)
       if m
-        #if m[2]
-        return m[1]
-        #else
-        #  Collection.where(uuid: ['contains', m[1]]).each do |u|
-        #    puts "fixup #{uuid} to #{u.uuid}"
-        #    return u.uuid
-        #  end
-        #end
+        if m[2]
+          return m[1]+m[2]
+        else
+          return m[1]
+        end
       else
         nil
       end
     end
 
+    def url_for u
+      p = { :host => @opts[:request].host,
+        :port => @opts[:request].port,
+        :protocol => @opts[:request].protocol }
+      p.merge! u
+      Rails.application.routes.url_helpers.url_for (p)
+    end
+
     def determine_fillcolor(n)
       fillcolor = %w(aaaaaa aaffaa aaaaff aaaaaa ffaaaa)[n || 0] || 'aaaaaa'
       "style=filled,fillcolor=\"##{fillcolor}\""
     end
 
     def describe_node(uuid)
-      bgcolor = determine_fillcolor @opts[:pips][uuid] if @opts[:pips]
+      uuid = uuid.to_sym
+      bgcolor = determine_fillcolor @opts[:pips].andand[uuid]
 
       rsc = ArvadosBase::resource_class_for_uuid uuid.to_s
       if rsc
-        href = "/#{rsc.to_s.underscore.pluralize rsc}/#{uuid}"
-      
+        href = url_for ({:controller => rsc.to_s.tableize,
+                          :action => :show,
+                          :id => uuid.to_s })
+
         #"\"#{uuid}\" [label=\"#{rsc}\\n#{uuid}\",href=\"#{href}\"];\n"
         if rsc == Collection
-          #puts uuid
-          if uuid == :"d41d8cd98f00b204e9800998ecf8427e+0"
+          if Collection.is_empty_blob_locator? uuid.to_s
             # special case
-            #puts "empty!"
             return "\"#{uuid}\" [label=\"(empty collection)\"];\n"
           end
-          if @pdata[uuid] 
-            #puts @pdata[uuid]
+          if @pdata[uuid]
             if @pdata[uuid][:name]
               return "\"#{uuid}\" [label=\"#{@pdata[uuid][:name]}\",href=\"#{href}\",shape=oval,#{bgcolor}];\n"
             else
@@ -55,7 +61,7 @@ module ProvenanceHelper
               elsif @pdata[uuid][:files]
                 files = @pdata[uuid][:files]
               end
-              
+
               if files
                 i = 0
                 label = ""
@@ -67,21 +73,25 @@ module ProvenanceHelper
                 if i < files.length
                   label += "\\n&vellip;"
                 end
-                return "\"#{uuid}\" [label=\"#{label}\",href=\"#{href}\",shape=oval,#{bgcolor}];\n"
+                extra_s = @node_extra[uuid].andand.map { |k,v|
+                  "#{k}=\"#{v}\""
+                }.andand.join ","
+                return "\"#{uuid}\" [label=\"#{label}\",href=\"#{href}\",shape=oval,#{bgcolor},#{extra_s}];\n"
               end
-            end  
+            end
           end
-          return "\"#{uuid}\" [label=\"#{rsc}\",href=\"#{href}\",#{bgcolor}];\n"
         end
+        return "\"#{uuid}\" [label=\"#{rsc}\",href=\"#{href}\",#{bgcolor}];\n"
       end
       "\"#{uuid}\" [#{bgcolor}];\n"
     end
 
     def job_uuid(job)
+      d = Digest::MD5.hexdigest(job[:script_parameters].to_json)
       if @opts[:combine_jobs] == :script_only
-        uuid = "#{job[:script]}"
+        uuid = "#{job[:script]}_#{d}"
       elsif @opts[:combine_jobs] == :script_and_version
-        uuid = "#{job[:script]}_#{job[:script_version]}"
+        uuid = "#{job[:script]}_#{job[:script_version]}_#{d}"
       else
         uuid = "#{job[:uuid]}"
       end
@@ -99,7 +109,7 @@ module ProvenanceHelper
         gr = "\"#{head}\" -> \"#{tail}\""
       end
       if extra.length > 0
-        gr += "["
+        gr += " ["
         extra.each do |k, v|
           gr += "#{k}=\"#{v}\","
         end
@@ -122,32 +132,33 @@ module ProvenanceHelper
       when Array
         i = 0
         node = ""
+        count = 0
         sp.each do |v|
           if GenerateGraph::collection_uuid(v)
             gr += script_param_edges(job, "#{prefix}[#{i}]", v)
           elsif @opts[:all_script_parameters]
-            node += "', '" unless node == ""
+            t = "#{v}"
+            nl = (if (count+t.length) > 60 then "\\n" else " " end)
+            count = 0 if (count+t.length) > 60
+            node += "',#{nl}'" unless node == ""
             node = "['" if node == ""
-            node += "#{v}"
+            node += t
+            count += t.length
           end
           i += 1
         end
         unless node == ""
           node += "']"
-          #puts node
-          #id = "#{job[:uuid]}_#{prefix}"
           gr += "\"#{node}\" [label=\"#{node}\"];\n"
-          gr += edge(job_uuid(job), node, {:label => prefix})        
+          gr += edge(job_uuid(job), node, {:label => prefix})
         end
       when String
         return '' if sp.empty?
         m = GenerateGraph::collection_uuid(sp)
-        #puts "#{m} pdata is #{@pdata[m.intern]}"
         if m and (@pdata[m.intern] or (not @opts[:pdata_only]))
           gr += edge(job_uuid(job), m, {:label => prefix})
           gr += generate_provenance_edges(m)
         elsif @opts[:all_script_parameters]
-          #id = "#{job[:uuid]}_#{prefix}"
           gr += "\"#{sp}\" [label=\"#{sp}\"];\n"
           gr += edge(job_uuid(job), sp, {:label => prefix})
         end
@@ -163,38 +174,36 @@ module ProvenanceHelper
       uuid = uuid.intern if uuid
 
       if (not uuid) or uuid.empty? or @visited[uuid]
-
-        #puts "already @visited #{uuid}"
         return ""
       end
 
-      if not @pdata[uuid] then 
+      if not @pdata[uuid] then
         return describe_node(uuid)
       else
         @visited[uuid] = true
       end
 
-      #puts "visiting #{uuid}"
-
-      if m  
+      if m
         # uuid is a collection
-        gr += describe_node(uuid)
-
-        if m == :"d41d8cd98f00b204e9800998ecf8427e+0"
-          # empty collection, don't follow any further
-          return gr
-        end
-
-        @pdata.each do |k, job|
-          if job[:output] == uuid.to_s
-            gr += edge(uuid, job_uuid(job), {:label => "output"})
-            gr += generate_provenance_edges(job[:uuid])
-          end
-          if job[:log] == uuid.to_s
-            gr += edge(uuid, job_uuid(job), {:label => "log"})
-            gr += generate_provenance_edges(job[:uuid])
+        if not Collection.is_empty_blob_locator? uuid.to_s
+          @pdata.each do |k, job|
+            if job[:output] == uuid.to_s
+              extra = { label: 'output' }
+              if job[:output_is_persistent]
+                extra[:label] += ' (persistent)'
+                @node_extra[uuid] ||= {}
+                @node_extra[uuid][:penwidth] = 4
+              end
+              gr += edge(uuid, job_uuid(job), extra)
+              gr += generate_provenance_edges(job[:uuid])
+            end
+            if job[:log] == uuid.to_s
+              gr += edge(uuid, job_uuid(job), {:label => "log"})
+              gr += generate_provenance_edges(job[:uuid])
+            end
           end
         end
+        gr += describe_node(uuid)
       else
         # uuid is something else
         rsc = ArvadosBase::resource_class_for_uuid uuid.to_s
@@ -209,6 +218,8 @@ module ProvenanceHelper
               gr += edge(job_uuid(job), job[:script_version], {:label => "script_version"})
             end
           end
+        elsif rsc == Link
+          # do nothing
         else
           gr += describe_node(uuid)
         end
@@ -216,22 +227,27 @@ module ProvenanceHelper
 
       @pdata.each do |k, link|
         if link[:head_uuid] == uuid.to_s and link[:link_class] == "provenance"
+          href = url_for ({:controller => Link.to_s.tableize,
+                            :action => :show,
+                            :id => link[:uuid] })
+
           gr += describe_node(link[:tail_uuid])
-          gr += edge(link[:head_uuid], link[:tail_uuid], {:label => link[:name], :href => "/links/#{link[:uuid]}"}) 
+          gr += edge(link[:head_uuid], link[:tail_uuid], {:label => link[:name], :href => href})
           gr += generate_provenance_edges(link[:tail_uuid])
         end
       end
 
-      #puts "finished #{uuid}"
-
       gr
     end
 
     def describe_jobs
       gr = ""
       @jobs.each do |k, v|
-        gr += "\"#{k}\" [href=\"/jobs?"
-        
+        href = url_for ({:controller => Job.to_s.tableize,
+                          :action => :index })
+
+        gr += "\"#{k}\" [href=\"#{href}?"
+
         n = 0
         v.each do |u|
           gr += "uuid%5b%5d=#{u[:uuid]}&"
@@ -239,13 +255,13 @@ module ProvenanceHelper
         end
 
         gr += "\",label=\""
-        
+
         if @opts[:combine_jobs] == :script_only
-          gr += uuid = "#{v[0][:script]}"
+          gr += "#{v[0][:script]}"
         elsif @opts[:combine_jobs] == :script_and_version
-          gr += uuid = "#{v[0][:script]}"
+          gr += "#{v[0][:script]}" # Just show the name but the nodes will be distinct
         else
-          gr += uuid = "#{v[0][:script]}\\n#{v[0][:finished_at]}"
+          gr += "#{v[0][:script]}\\n#{v[0][:finished_at]}"
         end
         gr += "\",#{determine_fillcolor n}];\n"
       end
@@ -266,7 +282,7 @@ module ProvenanceHelper
     unless pdata.is_a? Hash
       raise "create_provenance_graph accepts Array or Hash for pdata only, pdata is #{pdata.class}"
     end
-    
+
     gr = """strict digraph {
 node [fontsize=10,shape=box];
 edge [fontsize=10];
@@ -276,8 +292,6 @@ edge [fontsize=10];
       gr += "edge [dir=back];"
     end
 
-    #puts "@pdata is #{pdata}"
-
     g = GenerateGraph.new(pdata, opts)
 
     pdata.each do |k, v|
@@ -289,8 +303,6 @@ edge [fontsize=10];
     gr += "}"
     svg = ""
 
-    #puts gr
-
     require 'open3'
 
     Open3.popen2("dot", "-Tsvg") do |stdin, stdout, wait_thr|