X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/bfe7a62407aa0a6bc078659f259468f9b4105581..7209d0ade292bebbc8d92f8200778b3250e4130a:/build/run-tests.sh

diff --git a/build/run-tests.sh b/build/run-tests.sh
index 2831cf932e..8369632921 100755
--- a/build/run-tests.sh
+++ b/build/run-tests.sh
@@ -1,6 +1,9 @@
 #!/bin/bash
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
 
-. `dirname "$(readlink -f "$0")"`/libcloud-pin
+. `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
 
 COLUMNS=80
 . `dirname "$(readlink -f "$0")"`/run-library.sh
@@ -22,6 +25,8 @@ Options:
 --leave-temp   Do not remove GOPATH, virtualenv, and other temp dirs at exit.
                Instead, show the path to give as --temp to reuse them in
                subsequent invocations.
+--repeat N     Repeat each install/test step until it succeeds N times.
+--retry        Prompt to retry if an install or test suite fails.
 --skip-install Do not run any install steps. Just run tests.
                You should provide GOPATH, GEMHOME, and VENVDIR options
                from a previous invocation if you use this option.
@@ -70,12 +75,14 @@ services/arv-git-httpd
 services/crunchstat
 services/dockercleaner
 services/fuse
+services/health
 services/keep-web
 services/keepproxy
 services/keepstore
 services/keep-balance
 services/login-sync
 services/nodemanager
+services/nodemanager_integration
 services/crunch-run
 services/crunch-dispatch-local
 services/crunch-dispatch-slurm
@@ -83,17 +90,22 @@ services/ws
 sdk/cli
 sdk/pam
 sdk/python
+sdk/python:py3
 sdk/ruby
 sdk/go/arvados
 sdk/go/arvadosclient
+sdk/go/dispatch
 sdk/go/keepclient
+sdk/go/health
 sdk/go/httpserver
 sdk/go/manifest
 sdk/go/blockdigest
 sdk/go/streamer
 sdk/go/stats
+sdk/go/version
 sdk/go/crunchrunner
 sdk/cwl
+tools/arv-sync-groups
 tools/crunchstat-summary
 tools/keep-exercise
 tools/keep-rsync
@@ -119,7 +131,7 @@ GEMHOME=
 PERLINSTALLBASE=
 
 short=
-skip_install=
+only_install=
 temp=
 temp_preserve=
 
@@ -161,23 +173,26 @@ sanity_checks() {
     echo -n 'ruby: '
     ruby -v \
         || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
-    echo -n 'bundler: '
-    bundle version \
-        || fatal "No bundler. Try: gem install bundler"
     echo -n 'go: '
     go version \
         || fatal "No go binary. See http://golang.org/doc/install"
-    [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 7 ]] \
-        || fatal "Go >= 1.7 required. See http://golang.org/doc/install"
+    [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 8 ]] \
+        || fatal "Go >= 1.8 required. See http://golang.org/doc/install"
     echo -n 'gcc: '
     gcc --version | egrep ^gcc \
         || fatal "No gcc. Try: apt-get install build-essential"
     echo -n 'fuse.h: '
-    find /usr/include -wholename '*fuse/fuse.h' \
+    find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
         || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
-    echo -n 'pyconfig.h: '
-    find /usr/include -name pyconfig.h | egrep --max-count=1 . \
-        || fatal "No pyconfig.h. Try: apt-get install python-dev"
+    echo -n 'gnutls.h: '
+    find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
+        || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
+    echo -n 'Python2 pyconfig.h: '
+    find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
+        || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
+    echo -n 'Python3 pyconfig.h: '
+    find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
+        || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
     echo -n 'nginx: '
     PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
         || fatal "No nginx. Try: apt-get install nginx"
@@ -192,6 +207,33 @@ sanity_checks() {
     echo -n 'gitolite: '
     which gitolite \
         || fatal "No gitolite. Try: apt-get install gitolite3"
+    echo -n 'npm: '
+    npm --version \
+        || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
+    echo -n 'cadaver: '
+    cadaver --version | grep -w cadaver \
+          || fatal "No cadaver. Try: apt-get install cadaver"
+    echo -n 'libattr1 xattr.h: '
+    find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
+        || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
+    echo -n 'libcurl curl.h: '
+    find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
+        || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
+    echo -n 'libpq libpq-fe.h: '
+    find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
+        || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
+    echo -n 'services/api/config/database.yml: '
+    if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
+	    fatal "Please provide a database.yml file for the test suite"
+    else
+	    echo "OK"
+    fi
+    echo -n 'postgresql: '
+    psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
+    echo -n 'phantomjs: '
+    phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
+    echo -n 'xvfb: '
+    which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
 }
 
 rotate_logfile() {
@@ -219,14 +261,7 @@ do
             exit 1
             ;;
         --skip)
-            skipwhat="$1"; shift
-            if [[ "$skipwhat" == "apps/workbench" ]]; then
-              skip["apps/workbench_units"]=1
-              skip["apps/workbench_functionals"]=1
-              skip["apps/workbench_integration"]=1
-            else
-              skip[$skipwhat]=1
-            fi
+            skip[$1]=1; shift
             ;;
         --only)
             only="$1"; skip[$1]=""; shift
@@ -235,10 +270,9 @@ do
             short=1
             ;;
         --skip-install)
-            skip_install=1
+            only_install=nothing
             ;;
         --only-install)
-            skip_install=1
             only_install="$1"; shift
             ;;
         --temp)
@@ -248,6 +282,9 @@ do
         --leave-temp)
             temp_preserve=1
             ;;
+        --repeat)
+            repeat=$((${1}+0)); shift
+            ;;
         --retry)
             retry=1
             ;;
@@ -268,6 +305,13 @@ done
 
 start_api() {
     echo 'Starting API server...'
+    if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
+	mkdir -p "$WORKSPACE/services/api/log"
+    fi
+    # Remove empty api.pid file if it exists
+    if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
+	rm -f "$WORKSPACE/tmp/api.pid"
+    fi
     cd "$WORKSPACE" \
         && eval $(python sdk/python/tests/run_test_server.py start --auth admin) \
         && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
@@ -343,13 +387,13 @@ done
 
 setup_ruby_environment() {
     if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
-      source "$HOME/.rvm/scripts/rvm"
-      using_rvm=true
+        source "$HOME/.rvm/scripts/rvm"
+        using_rvm=true
     elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
-      source "/usr/local/rvm/scripts/rvm"
-      using_rvm=true
+        source "/usr/local/rvm/scripts/rvm"
+        using_rvm=true
     else
-      using_rvm=false
+        using_rvm=false
     fi
 
     if [[ "$using_rvm" == true ]]; then
@@ -398,12 +442,14 @@ setup_ruby_environment() {
 
         tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
         PATH="$tmpdir_gem_home/bin:$PATH"
-        export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
+        export GEM_PATH="$tmpdir_gem_home"
 
         echo "Will install dependencies to $(gem env gemdir)"
         echo "Will install arvados gems to $tmpdir_gem_home"
         echo "Gem search path is GEM_PATH=$GEM_PATH"
     fi
+    bundle config || gem install bundler \
+        || fatal 'install bundler'
 }
 
 with_test_gemset() {
@@ -440,8 +486,10 @@ export PERLLIB="$PERLINSTALLBASE/lib/perl5:${PERLLIB:+$PERLLIB}"
 
 export GOPATH
 mkdir -p "$GOPATH/src/git.curoverse.com"
-ln -sfn "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git" \
+ln -sfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git" \
     || fatal "symlink failed"
+go get -v github.com/kardianos/govendor \
+    || fatal "govendor install failed"
 
 setup_virtualenv "$VENVDIR" --python python2.7
 . "$VENVDIR/bin/activate"
@@ -457,27 +505,47 @@ pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
     || pip install --pre --ignore-installed https://github.com/curoverse/libcloud/archive/apache-libcloud-$LIBCLOUD_PIN.zip >/dev/null \
     || fatal "pip install apache-libcloud failed"
 
-# Uninstall old llfuse (<1.0), because services/fuse "pip install"
-# won't upgrade it by default.
-if pip freeze | egrep '^llfuse==0'; then
-    yes | pip uninstall 'llfuse<1.0'
-fi
+# We need an unreleased (as of 2017-08-17) llfuse bugfix, otherwise our fuse test suite deadlocks.
+pip freeze | grep -x llfuse==1.2.0 || (
+    set -e
+    yes | pip uninstall llfuse || true
+    cython --version || fatal "no cython; try sudo apt-get install cython"
+    cd "$temp"
+    (cd python-llfuse 2>/dev/null || git clone https://github.com/curoverse/python-llfuse)
+    cd python-llfuse
+    git checkout 620722fd990ea642ddb8e7412676af482c090c0c
+    git checkout setup.py
+    sed -i -e "s:'1\\.2':'1.2.0':" setup.py
+    python setup.py build_cython
+    python setup.py install --force
+) || fatal "llfuse fork failed"
+pip freeze | grep -x llfuse==1.2.0 || fatal "error: installed llfuse 1.2.0 but '$(pip freeze | grep llfuse)' ???"
 
 # Deactivate Python 2 virtualenv
 deactivate
 
+declare -a pythonstuff
+pythonstuff=(
+    sdk/pam
+    sdk/python
+    sdk/python:py3
+    sdk/cwl
+    services/dockercleaner:py3
+    services/fuse
+    services/nodemanager
+    tools/crunchstat-summary
+    )
+
 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
 # Otherwise, skip dependent tests.
 PYTHON3=$(which python3)
-if [ "0" = "$?" ]; then
+if [[ ${?} = 0 ]]; then
     setup_virtualenv "$VENV3DIR" --python python3
 else
     PYTHON3=
-    skip[services/dockercleaner]=1
     cat >&2 <<EOF
 
-Warning: python3 could not be found
-services/dockercleaner install and tests will be skipped
+Warning: python3 could not be found. Python 3 tests will be skipped.
 
 EOF
 fi
@@ -497,136 +565,154 @@ then
 fi
 
 retry() {
-    while ! ${@} && [[ "$retry" == 1 ]]
+    remain="${repeat}"
+    while :
     do
-        read -p 'Try again? [Y/n] ' x
-        if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
-        then
+        if ${@}; then
+            if [[ "$remain" -gt 1 ]]; then
+                remain=$((${remain}-1))
+                title "Repeating ${remain} more times"
+            else
+                break
+            fi
+        elif [[ "$retry" == 1 ]]; then
+            read -p 'Try again? [Y/n] ' x
+            if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
+            then
+                break
+            fi
+        else
             break
         fi
     done
 }
 
 do_test() {
-    retry do_test_once ${@}
+    case "${1}" in
+        apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
+            suite=apps/workbench
+            ;;
+        services/nodemanager | services/nodemanager_integration)
+            suite=services/nodemanager_suite
+            ;;
+        *)
+            suite="${1}"
+            ;;
+    esac
+    if [[ -z "${skip[$suite]}" && -z "${skip[$1]}" && \
+                (-z "${only}" || "${only}" == "${suite}" || \
+                 "${only}" == "${1}") ]]; then
+        retry do_test_once ${@}
+    else
+        title "Skipping ${1} tests"
+    fi
 }
 
 do_test_once() {
     unset result
-    to_test=$1
-    if (( [[ "$only" == "apps/workbench" ]] ) &&
-       ( [[ "$to_test" == "apps/workbench_units" ]] || [[ "$to_test" == "apps/workbench_functionals" ]] ||
-         [[ "$to_test" == "apps/workbench_integration" ]])); then
-      to_test="apps/workbench"
-    fi
-    if [[ -z "${skip[$1]}" ]] && ( [[ -z "$only" ]] || [[ "$only" == "$to_test" ]] )
+
+    title "Running $1 tests"
+    timer_reset
+    if [[ "$2" == "go" ]]
     then
-        title "Running $1 tests"
-        timer_reset
-        if [[ "$2" == "go" ]]
-        then
-            covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
-            coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
-            # We do "go get -t" here to catch compilation errors
-            # before trying "go test". Otherwise, coverage-reporting
-            # mode makes Go show the wrong line numbers when reporting
-            # compilation errors.
-            go get -t "git.curoverse.com/arvados.git/$1" || return 1
-            cd "$WORKSPACE/$1" || return 1
-            gofmt -e -d . | egrep . && result=1
+        covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
+        coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
+        # We do "go get -t" here to catch compilation errors
+        # before trying "go test". Otherwise, coverage-reporting
+        # mode makes Go show the wrong line numbers when reporting
+        # compilation errors.
+        go get -t "git.curoverse.com/arvados.git/$1" && \
+            cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
+            [[ -z "$(gofmt -e -d . | tee /dev/stderr)" ]] && \
             if [[ -n "${testargs[$1]}" ]]
-            then
-                # "go test -check.vv giturl" doesn't work, but this
-                # does:
-                cd "$WORKSPACE/$1" && go test ${short:+-short} ${testargs[$1]}
-            else
-                # The above form gets verbose even when testargs is
-                # empty, so use this form in such cases:
-                go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
-            fi
-            result=${result:-$?}
-            if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
-            then
-                go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
-                rm "$WORKSPACE/tmp/.$covername.tmp"
-            fi
-        elif [[ "$2" == "pip" ]]
-        then
-            tries=0
-            cd "$WORKSPACE/$1" && while :
-            do
-                tries=$((${tries}+1))
-                # $3 can name a path directory for us to use, including trailing
-                # slash; e.g., the bin/ subdirectory of a virtualenv.
-                "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
-                result=$?
-                if [[ ${tries} < 3 && ${result} == 137 ]]
-                then
-                    printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
-                    continue
-                else
-                    break
-                fi
-            done
-        elif [[ "$2" != "" ]]
         then
-            "test_$2"
+            # "go test -check.vv giturl" doesn't work, but this
+            # does:
+            go test ${short:+-short} ${testargs[$1]}
         else
-            "test_$1"
+            # The above form gets verbose even when testargs is
+            # empty, so use this form in such cases:
+            go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
         fi
         result=${result:-$?}
-        checkexit $result "$1 tests"
-        title "End of $1 tests (`timer`)"
-        return $result
+        if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
+        then
+            go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
+            rm "$WORKSPACE/tmp/.$covername.tmp"
+        fi
+    elif [[ "$2" == "pip" ]]
+    then
+        tries=0
+        cd "$WORKSPACE/$1" && while :
+        do
+            tries=$((${tries}+1))
+            # $3 can name a path directory for us to use, including trailing
+            # slash; e.g., the bin/ subdirectory of a virtualenv.
+            "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
+            result=$?
+            if [[ ${tries} < 3 && ${result} == 137 ]]
+            then
+                printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
+                continue
+            else
+                break
+            fi
+        done
+    elif [[ "$2" != "" ]]
+    then
+        "test_$2"
     else
-        title "Skipping $1 tests"
+        "test_$1"
     fi
+    result=${result:-$?}
+    checkexit $result "$1 tests"
+    title "End of $1 tests (`timer`)"
+    return $result
 }
 
 do_install() {
-    retry do_install_once ${@}
+    if [[ -z "${only_install}" || "${only_install}" == "${1}" ]]; then
+        retry do_install_once ${@}
+    else
+        title "Skipping $1 install"
+    fi
 }
 
 do_install_once() {
-    if [[ -z "$skip_install" || (-n "$only_install" && "$only_install" == "$1") ]]
+    title "Running $1 install"
+    timer_reset
+    if [[ "$2" == "go" ]]
     then
-        title "Running $1 install"
-        timer_reset
-        if [[ "$2" == "go" ]]
-        then
-            go get -t "git.curoverse.com/arvados.git/$1"
-        elif [[ "$2" == "pip" ]]
-        then
-            # $3 can name a path directory for us to use, including trailing
-            # slash; e.g., the bin/ subdirectory of a virtualenv.
-
-            # Need to change to a different directory after creating
-            # the source dist package to avoid a pip bug.
-            # see https://arvados.org/issues/5766 for details.
-
-            # Also need to install twice, because if it believes the package is
-            # already installed, pip it won't install it.  So the first "pip
-            # install" ensures that the dependencies are met, the second "pip
-            # install" ensures that we've actually installed the local package
-            # we just built.
-            cd "$WORKSPACE/$1" \
-                && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
-                && cd "$WORKSPACE" \
-                && "${3}pip" install --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
-                && "${3}pip" install --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
-        elif [[ "$2" != "" ]]
-        then
-            "install_$2"
-        else
-            "install_$1"
-        fi
-        result=$?
-        checkexit $result "$1 install"
-        title "End of $1 install (`timer`)"
-        return $result
+        go get -t "git.curoverse.com/arvados.git/$1"
+    elif [[ "$2" == "pip" ]]
+    then
+        # $3 can name a path directory for us to use, including trailing
+        # slash; e.g., the bin/ subdirectory of a virtualenv.
+
+        # Need to change to a different directory after creating
+        # the source dist package to avoid a pip bug.
+        # see https://arvados.org/issues/5766 for details.
+
+        # Also need to install twice, because if it believes the package is
+        # already installed, pip it won't install it.  So the first "pip
+        # install" ensures that the dependencies are met, the second "pip
+        # install" ensures that we've actually installed the local package
+        # we just built.
+        cd "$WORKSPACE/$1" \
+            && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
+            && cd "$WORKSPACE" \
+            && "${3}pip" install --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
+            && "${3}pip" install --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
+    elif [[ "$2" != "" ]]
+    then
+        "install_$2"
     else
-        title "Skipping $1 install"
+        "install_$1"
     fi
+    result=$?
+    checkexit $result "$1 install"
+    title "End of $1 install (`timer`)"
+    return $result
 }
 
 bundle_install_trylocal() {
@@ -685,22 +771,19 @@ do_install services/login-sync login-sync
 # module. We can't actually *test* the Python SDK yet though, because
 # its own test suite brings up some of those other programs (like
 # keepproxy).
-declare -a pythonstuff
-pythonstuff=(
-    sdk/pam
-    sdk/python
-    sdk/cwl
-    services/fuse
-    services/nodemanager
-    tools/crunchstat-summary
-    )
 for p in "${pythonstuff[@]}"
 do
-    do_install "$p" pip
+    dir=${p%:py3}
+    if [[ ${dir} = ${p} ]]; then
+        if [[ -z ${skip[python2]} ]]; then
+            do_install ${dir} pip
+        fi
+    elif [[ -n ${PYTHON3} ]]; then
+        if [[ -z ${skip[python3]} ]]; then
+            do_install ${dir} pip "$VENV3DIR/bin/"
+        fi
+    fi
 done
-if [ -n "$PYTHON3" ]; then
-    do_install services/dockercleaner pip "$VENV3DIR/bin/"
-fi
 
 install_apiserver() {
     cd "$WORKSPACE/services/api" \
@@ -711,33 +794,12 @@ install_apiserver() {
 
     if [ -n "$CONFIGSRC" ]
     then
-        for f in database.yml application.yml
+        for f in database.yml
         do
             cp "$CONFIGSRC/$f" config/ || fatal "$f"
         done
     fi
 
-    # Fill in a random secret_token and blob_signing_key for testing
-    SECRET_TOKEN=`echo 'puts rand(2**512).to_s(36)' |ruby`
-    BLOB_SIGNING_KEY=`echo 'puts rand(2**512).to_s(36)' |ruby`
-
-    sed -i'' -e "s:SECRET_TOKEN:$SECRET_TOKEN:" config/application.yml
-    sed -i'' -e "s:BLOB_SIGNING_KEY:$BLOB_SIGNING_KEY:" config/application.yml
-
-    # Set up empty git repo (for git tests)
-    GITDIR=$(mktemp -d)
-    sed -i'' -e "s:/var/cache/git:$GITDIR:" config/application.default.yml
-
-    rm -rf $GITDIR
-    mkdir -p $GITDIR/test
-    cd $GITDIR/test \
-        && git init \
-        && git config user.email "jenkins@ci.curoverse.com" \
-        && git config user.name "Jenkins, CI" \
-        && touch tmp \
-        && git add tmp \
-        && git commit -m 'initial commit'
-
     # Clear out any lingering postgresql connections to the test
     # database, so that we can drop it. This assumes the current user
     # is a postgresql superuser.
@@ -745,6 +807,8 @@ install_apiserver() {
         && test_database=$(python -c "import yaml; print yaml.load(file('config/database.yml'))['test']['database']") \
         && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.procpid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
 
+    mkdir -p "$WORKSPACE/services/api/tmp/pids"
+
     cd "$WORKSPACE/services/api" \
         && RAILS_ENV=test bundle exec rake db:drop \
         && RAILS_ENV=test bundle exec rake db:setup \
@@ -752,19 +816,26 @@ install_apiserver() {
 }
 do_install services/api apiserver
 
+cd "$GOPATH/src/git.curoverse.com/arvados.git" && \
+    "$GOPATH/bin/govendor" sync -v || \
+        fatal "govendor sync failed"
 declare -a gostuff
 gostuff=(
     sdk/go/arvados
     sdk/go/arvadosclient
     sdk/go/blockdigest
+    sdk/go/dispatch
+    sdk/go/health
     sdk/go/httpserver
     sdk/go/manifest
     sdk/go/streamer
     sdk/go/crunchrunner
     sdk/go/stats
+    sdk/go/version
     lib/crunchstat
     services/arv-git-httpd
     services/crunchstat
+    services/health
     services/keep-web
     services/keepstore
     sdk/go/keepclient
@@ -777,7 +848,8 @@ gostuff=(
     tools/keep-block-check
     tools/keep-exercise
     tools/keep-rsync
-    )
+    tools/arv-sync-groups
+)
 for g in "${gostuff[@]}"
 do
     do_install "$g" go
@@ -786,10 +858,13 @@ done
 install_workbench() {
     cd "$WORKSPACE/apps/workbench" \
         && mkdir -p tmp/cache \
-        && RAILS_ENV=test bundle_install_trylocal
+        && RAILS_ENV=test bundle_install_trylocal \
+        && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
 }
 do_install apps/workbench workbench
 
+unset http_proxy https_proxy no_proxy
+
 test_doclinkchecker() {
     (
         set -e
@@ -818,7 +893,7 @@ if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
   exit_cleanly
 fi
 
-start_api
+start_api || { stop_services; fatal "start_api"; }
 
 test_ruby_sdk() {
     cd "$WORKSPACE/sdk/ruby" \
@@ -839,11 +914,25 @@ test_login-sync() {
 }
 do_test services/login-sync login-sync
 
+test_nodemanager_integration() {
+    cd "$WORKSPACE/services/nodemanager" \
+        && tests/integration_test.py ${testargs[services/nodemanager_integration]}
+}
+do_test services/nodemanager_integration nodemanager_integration
+
 for p in "${pythonstuff[@]}"
 do
-    do_test "$p" pip
+    dir=${p%:py3}
+    if [[ ${dir} = ${p} ]]; then
+        if [[ -z ${skip[python2]} ]]; then
+            do_test ${dir} pip
+        fi
+    elif [[ -n ${PYTHON3} ]]; then
+        if [[ -z ${skip[python3]} ]]; then
+            do_test ${dir} pip "$VENV3DIR/bin/"
+        fi
+    fi
 done
-do_test services/dockercleaner pip "$VENV3DIR/bin/"
 
 for g in "${gostuff[@]}"
 do