X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/bed472363447f572f9664ff8b3d5a056fc87ec4f..765604b096c464b242e60860ace75bd6645fd4e7:/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml diff --git a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml index 4a6b6947ff..458d5a37a7 100644 --- a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml +++ b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml @@ -302,13 +302,127 @@ $graph: See https://docs.nvidia.com/deploy/cuda-compatibility/ for details. - cudaComputeCapabilityMin: - type: string - doc: Minimum CUDA hardware capability required to run the software, in X.Y format. - deviceCountMin: - type: int? + cudaComputeCapability: + type: + - 'string' + - 'string[]' + doc: | + CUDA hardware capability required to run the software, in X.Y + format. + + * If this is a single value, it defines only the minimum + compute capability. GPUs with higher capability are also + accepted. + + * If it is an array value, then only select GPUs with compute + capabilities that explicitly appear in the array. + cudaDeviceCountMin: + type: ['null', int, cwl:Expression] default: 1 - doc: Minimum number of GPU devices to request, default 1. - deviceCountMax: - type: int? - doc: Maximum number of GPU devices to request. If not specified, same as `deviceCountMin`. + doc: | + Minimum number of GPU devices to request. If not specified, + same as `cudaDeviceCountMax`. If neither are specified, + default 1. + cudaDeviceCountMax: + type: ['null', int, cwl:Expression] + doc: | + Maximum number of GPU devices to request. If not specified, + same as `cudaDeviceCountMin`. + +- name: UsePreemptible + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Specify a workflow step should opt-in or opt-out of using preemptible (spot) instances. + fields: + class: + type: string + doc: "Always 'arv:UsePreemptible" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + usePreemptible: boolean + +- name: OutputCollectionProperties + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Specify metadata properties that will be set on the output + collection associated with this workflow or step. + fields: + class: + type: string + doc: "Always 'arv:OutputCollectionProperties" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + outputProperties: + type: PropertyDef[] + jsonldPredicate: + mapSubject: propertyName + mapPredicate: propertyValue + + +- name: KeepCacheType + type: enum + symbols: + - ram_cache + - disk_cache + doc: + - | + ram_cache: Keep blocks will be cached in RAM only. + - | + disk_cache: Keep blocks will be cached to disk and + memory-mapped. The disk cache leverages the kernel's virtual + memory system so "hot" data will generally still be kept in + RAM. + +- name: KeepCacheTypeRequirement + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Choose keep cache strategy. + fields: + - name: class + type: string + doc: "'arv:KeepCacheTypeRequirement'" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: keepCacheType + type: KeepCacheType? + doc: | + Whether Keep blocks loaded by arv-mount should be kept in RAM + only or written to disk and memory-mapped. The disk cache + leverages the kernel's virtual memory system so "hot" data will + generally still be kept in RAM. + +- name: OutOfMemoryRetry + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Detect when a failed tool run may have run out of memory, and + re-submit the container with more RAM. + fields: + - name: class + type: string + doc: "'arv:OutOfMemoryRetry" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: memoryErrorRegex + type: string? + doc: | + A regular expression that will be used on the text of stdout + and stderr produced by the tool to determine if a failed job + should be retried with more RAM. By default, searches for the + substrings 'bad_alloc' and 'OutOfMemory'. + - name: memoryRetryMultipler + type: float + doc: | + If the container failed on its first run, re-submit the + container with the RAM request multiplied by this factor.