X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/bc6b243539b5480493c7aa758a1272a1a42b58f1..523dadebfbee9a73a21c3f78c7b4af329930d393:/sdk/cwl/arvados_cwl/arvjob.py diff --git a/sdk/cwl/arvados_cwl/arvjob.py b/sdk/cwl/arvados_cwl/arvjob.py index 7cde2736c6..78bca6e0e1 100644 --- a/sdk/cwl/arvados_cwl/arvjob.py +++ b/sdk/cwl/arvados_cwl/arvjob.py @@ -40,7 +40,6 @@ class ArvadosJob(object): if self.generatefiles["listing"]: vwd = arvados.collection.Collection() script_parameters["task.vwd"] = {} - logger.debug("generatefiles is %s", json.dumps(self.generatefiles, indent=4)) generatemapper = InitialWorkDirPathMapper([self.generatefiles], "", "", separateDirs=False) for f, p in generatemapper.items(): @@ -187,9 +186,11 @@ class ArvadosJob(object): except WorkflowException as e: logger.error("Error while collecting job outputs:\n%s", e, exc_info=(e if self.arvrunner.debug else False)) processStatus = "permanentFail" + outputs = None except Exception as e: logger.exception("Got unknown exception while collecting job outputs:") processStatus = "permanentFail" + outputs = None self.output_callback(outputs, processStatus) finally: