X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/bb506312949465d4503d7f0b4434cfcd435cda0a..d825b0330a1b51d8ccbb25e7dc7d9aac26e781e0:/sdk/cwl/arvados_cwl/arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index 66fe143e0f..57ab7367a3 100644
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -523,6 +523,15 @@ class RunnerContainer(Runner):
                 "kind": "collection",
                 "portable_data_hash": "%s" % workflowcollection
             }
+        elif self.embedded_tool.tool.get("id", "").startswith("arvwf:"):
+            workflowpath = "/var/lib/cwl/workflow.json#main"
+            record = self.arvrunner.api.workflows().get(uuid=self.embedded_tool.tool["id"][6:33]).execute(num_retries=self.arvrunner.num_retries)
+            packed = yaml.safe_load(record["definition"])
+            container_req["mounts"]["/var/lib/cwl/workflow.json"] = {
+                "kind": "json",
+                "content": packed
+            }
+            container_req["properties"]["template_uuid"] = self.embedded_tool.tool["id"][6:33]
         else:
             packed = packed_workflow(self.arvrunner, self.embedded_tool, self.merged_map, runtimeContext, git_info)
             workflowpath = "/var/lib/cwl/workflow.json#main"
@@ -530,8 +539,6 @@ class RunnerContainer(Runner):
                 "kind": "json",
                 "content": packed
             }
-            if self.embedded_tool.tool.get("id", "").startswith("arvwf:"):
-                container_req["properties"]["template_uuid"] = self.embedded_tool.tool["id"][6:33]
 
         container_req["properties"].update({k.replace("http://arvados.org/cwl#", "arv:"): v for k, v in git_info.items()})