X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/b402e6a66e569167c0e990a4fdfc2843df76afd8..59b414ff7a625ad3d6e92659b20bdabc6d89e7d4:/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid diff --git a/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid b/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid index ea608b4bc1..bf9b24272c 100644 --- a/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid +++ b/doc/user/topics/tutorial-gatk-variantfiltration.html.textile.liquid @@ -6,7 +6,7 @@ title: "Using GATK with Arvados" This tutorial demonstrates how to use the Genome Analysis Toolkit (GATK) with Arvados. In this example we will install GATK and then create a VariantFiltration job to assign pass/fail scores to variants in a VCF file. -*This tutorial assumes that you are "logged into an Arvados VM instance":{{site.baseurl}}/user/getting_started/ssh-access.html#login, and have a "working environment.":{{site.baseurl}}/user/getting_started/check-environment.html* +{% include 'tutorial_expectations' %} h2. Installing GATK @@ -149,12 +149,7 @@ Now start a job: "is_locked_by_uuid":null, "log":null, "runtime_constraints":{}, - "tasks_summary":{}, - "dependencies":[ - "5ee633fe2569d2a42dd81b07490d5d13+82", - "c905c8d8443a9c44274d98b7c6cfaa32+94", - "d237a90bae3870b3b033aea1e99de4a9+10820" - ] + "tasks_summary":{} }