X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/af448be33f2c5ddde29f2809093722f4ee67a112..540b72d62a94015f116ba077e279a5f10d666778:/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml diff --git a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml index af75481431..91a05e1254 100644 --- a/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml +++ b/sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml @@ -299,8 +299,8 @@ $graph: - type: record name: PropertyDef doc: | - Define a property that will be set on the submitted container - request associated with this workflow or step. + Define an arvados metadata property that will be set on a + container request or output collection. fields: - name: propertyName type: string @@ -400,3 +400,86 @@ $graph: _id: "@type" _type: "@vocab" usePreemptible: boolean + +- name: OutputCollectionProperties + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Specify metadata properties that will be set on the output + collection associated with this workflow or step. + fields: + class: + type: string + doc: "Always 'arv:OutputCollectionProperties" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + outputProperties: + type: PropertyDef[] + jsonldPredicate: + mapSubject: propertyName + mapPredicate: propertyValue + + +- name: KeepCacheType + type: enum + symbols: + - ram_cache + - disk_cache + doc: + - | + ram_cache: Keep blocks will be cached in RAM only. + - | + disk_cache: Keep blocks will be cached to disk and + memory-mapped. The disk cache leverages the kernel's virtual + memory system so "hot" data will generally still be kept in + RAM. + +- name: KeepCacheTypeRequirement + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Choose keep cache strategy. + fields: + - name: class + type: string + doc: "'arv:KeepCacheTypeRequirement'" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: keepCacheType + type: KeepCacheType? + doc: | + Whether Keep blocks loaded by arv-mount should be kept in RAM + only or written to disk and memory-mapped. The disk cache + leverages the kernel's virtual memory system so "hot" data will + generally still be kept in RAM. + +- name: OutOfMemoryRetry + type: record + extends: cwl:ProcessRequirement + inVocab: false + doc: | + Detect when a failed tool run may have run out of memory, and + re-submit the container with more RAM. + fields: + - name: class + type: string + doc: "'arv:OutOfMemoryRetry" + jsonldPredicate: + _id: "@type" + _type: "@vocab" + - name: memoryErrorRegex + type: string? + doc: | + A regular expression that will be used on the text of stdout + and stderr produced by the tool to determine if a failed job + should be retried with more RAM. By default, searches for the + substrings 'bad_alloc' and 'OutOfMemory'. + - name: memoryRetryMultipler + type: float + doc: | + If the container failed on its first run, re-submit the + container with the RAM request multiplied by this factor.