X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/ac2cc876733c6137d525d12780275f2c02d84383..474c0be6cf3beb536e83a42a08220313e303decf:/build/run-build-packages.sh diff --git a/build/run-build-packages.sh b/build/run-build-packages.sh index 9ffa20fe64..fd313cf10e 100755 --- a/build/run-build-packages.sh +++ b/build/run-build-packages.sh @@ -19,7 +19,7 @@ Options: --debug Output debug information (default: false) --target - Distribution to build packages for (default: debian8) + Distribution to build packages for (default: debian9) --only-build Build only a specific package (or $ONLY_BUILD from environment) --command @@ -30,9 +30,19 @@ WORKSPACE=path Path to the Arvados source tree to build packages from EOF -EXITCODE=0 +# Begin of user configuration + +# set to --no-cache-dir to disable pip caching +CACHE_FLAG= + +MAINTAINER="Ward Vandewege " +VENDOR="Veritas Genetics, Inc." + +# End of user configuration + DEBUG=${ARVADOS_DEBUG:-0} -TARGET=debian8 +EXITCODE=0 +TARGET=debian9 COMMAND= PARSEDOPTS=$(getopt --name "$0" --longoptions \ @@ -117,7 +127,7 @@ case "$TARGET" in PYTHON2_INSTALL_LIB=lib/python$PYTHON2_VERSION/site-packages PYTHON3_PACKAGE=$(rpm -qf "$(which python$PYTHON3_VERSION)" --queryformat '%{NAME}\n') PYTHON3_PKG_PREFIX=$PYTHON3_PACKAGE - PYTHON3_PREFIX=/opt/rh/python33/root/usr + PYTHON3_PREFIX=/opt/rh/rh-python36/root/usr PYTHON3_INSTALL_LIB=lib/python$PYTHON3_VERSION/site-packages export PYCURL_SSL_LIBRARY=nss ;; @@ -215,7 +225,7 @@ if [[ -z "$ONLY_BUILD" ]] || [[ "libarvados-perl" = "$ONLY_BUILD" ]] ; then perl Makefile.PL INSTALL_BASE=install >"$STDOUT_IF_DEBUG" && \ make install INSTALLDIRS=perl >"$STDOUT_IF_DEBUG" && \ fpm_build install/lib/=/usr/share libarvados-perl \ - "Curoverse, Inc." dir "$(version_from_git)" install/man/=/usr/share/man \ + dir "$(version_from_git)" install/man/=/usr/share/man \ "$WORKSPACE/apache-2.0.txt=/usr/share/doc/libarvados-perl/apache-2.0.txt" && \ mv --no-clobber libarvados-perl*.$FORMAT "$WORKSPACE/packages/$TARGET/" fi @@ -238,21 +248,6 @@ handle_ruby_gem arvados-login-sync # Python packages debug_echo -e "\nPython packages\n" -cd "$WORKSPACE/sdk/pam" -handle_python_package - -cd "$WORKSPACE/sdk/python" -handle_python_package - -cd "$WORKSPACE/sdk/cwl" -handle_python_package - -cd "$WORKSPACE/services/fuse" -handle_python_package - -cd "$WORKSPACE/services/nodemanager" -handle_python_package - # arvados-src ( cd "$WORKSPACE" @@ -277,10 +272,9 @@ handle_python_package cd "$SRC_BUILD_DIR" PKG_VERSION=$(version_from_git) cd $WORKSPACE/packages/$TARGET - fpm_build $SRC_BUILD_DIR/=/usr/local/arvados/src arvados-src 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--exclude=usr/local/arvados/src/.git" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=The Arvados source code" "--architecture=all" + fpm_build $SRC_BUILD_DIR/=/usr/local/arvados/src arvados-src 'dir' "$PKG_VERSION" "--exclude=usr/local/arvados/src/.git" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=The Arvados source code" "--architecture=all" rm -rf "$SRC_BUILD_DIR" - fi ) @@ -294,8 +288,8 @@ package_go_binary cmd/arvados-server arvados-server \ "Arvados server daemons" package_go_binary cmd/arvados-server arvados-controller \ "Arvados cluster controller daemon" -package_go_binary sdk/go/crunchrunner crunchrunner \ - "Crunchrunner executes a command inside a container and uploads the output" +package_go_binary cmd/arvados-server arvados-dispatch-cloud \ + "Arvados cluster cloud dispatch" package_go_binary services/arv-git-httpd arvados-git-httpd \ "Provide authenticated http access to Arvados-hosted git repositories" package_go_binary services/crunch-dispatch-local crunch-dispatch-local \ @@ -327,240 +321,43 @@ package_go_binary tools/keep-rsync keep-rsync \ package_go_binary tools/keep-exercise keep-exercise \ "Performance testing tool for Arvados Keep" -# The Python SDK -# Please resist the temptation to add --no-python-fix-name to the fpm call here -# (which would remove the python- prefix from the package name), because this -# package is a dependency of arvados-fuse, and fpm can not omit the python- -# prefix from only one of the dependencies of a package... Maybe I could -# whip up a patch and send it upstream, but that will be for another day. Ward, -# 2014-05-15 -cd $WORKSPACE/packages/$TARGET -rm -rf "$WORKSPACE/sdk/python/build" -arvados_python_client_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/python/arvados_python_client.egg-info/PKG-INFO)} -test_package_presence ${PYTHON2_PKG_PREFIX}-arvados-python-client "$arvados_python_client_version" python -if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/sdk/python "${PYTHON2_PKG_PREFIX}-arvados-python-client" 'Curoverse, Inc.' 'python' "$arvados_python_client_version" "--url=https://arvados.org" "--description=The Arvados Python SDK" --depends "${PYTHON2_PKG_PREFIX}-setuptools" --deb-recommends=git -fi +# The Python SDK - Should be built first because it's needed by others +fpm_build_virtualenv "arvados-python-client" "sdk/python" -# cwl-runner -cd $WORKSPACE/packages/$TARGET -rm -rf "$WORKSPACE/sdk/cwl/build" -arvados_cwl_runner_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/cwl/arvados_cwl_runner.egg-info/PKG-INFO)} -declare -a iterargs=() -if [[ -z "$ARVADOS_BUILDING_VERSION" ]]; then - arvados_cwl_runner_iteration=4 - iterargs+=(--iteration $arvados_cwl_runner_iteration) -else - arvados_cwl_runner_iteration= -fi -test_package_presence ${PYTHON2_PKG_PREFIX}-arvados-cwl-runner "$arvados_cwl_runner_version" python "$arvados_cwl_runner_iteration" -if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/sdk/cwl "${PYTHON2_PKG_PREFIX}-arvados-cwl-runner" 'Curoverse, Inc.' 'python' "$arvados_cwl_runner_version" "--url=https://arvados.org" "--description=The Arvados CWL runner" --depends "${PYTHON2_PKG_PREFIX}-setuptools" --depends "${PYTHON2_PKG_PREFIX}-subprocess32 >= 3.5.0" --depends "${PYTHON2_PKG_PREFIX}-pathlib2" --depends "${PYTHON2_PKG_PREFIX}-scandir" "${iterargs[@]}" -fi - -# schema_salad. This is a python dependency of arvados-cwl-runner, -# but we can't use the usual PYTHONPACKAGES way to build this package due to the -# intricacies of how version numbers get generated in setup.py: we need a specific version, -# e.g. 1.7.20160316203940. If we don't explicitly list that version with the -v -# argument to fpm, and instead specify it as schema_salad==1.7.20160316203940, we get -# a package with version 1.7. That's because our gittagger hack is not being -# picked up by self.distribution.get_version(), which is called from -# https://github.com/jordansissel/fpm/blob/master/lib/fpm/package/pyfpm/get_metadata.py -# by means of this command: -# -# python2.7 setup.py --command-packages=pyfpm get_metadata --output=metadata.json -# -# So we build this thing separately. -# -# Ward, 2016-03-17 -saladversion=$(cat "$WORKSPACE/sdk/cwl/setup.py" | grep schema-salad== | sed "s/.*==\(.*\)'.*/\1/") -test_package_presence python-schema-salad "$saladversion" python 2 -if [[ "$?" == "0" ]]; then - fpm_build schema_salad "" "" python $saladversion --depends "${PYTHON2_PKG_PREFIX}-lockfile >= 1:0.12.2-2" --depends "${PYTHON2_PKG_PREFIX}-avro = 1.8.1-2" --iteration 2 -fi - -# And for cwltool we have the same problem as for schema_salad. Ward, 2016-03-17 -cwltoolversion=$(cat "$WORKSPACE/sdk/cwl/setup.py" | grep cwltool== | sed "s/.*==\(.*\)'.*/\1/") -test_package_presence python-cwltool "$cwltoolversion" python 2 -if [[ "$?" == "0" ]]; then - fpm_build cwltool "" "" python $cwltoolversion --iteration 2 -fi +# Arvados cwl runner +fpm_build_virtualenv "arvados-cwl-runner" "sdk/cwl" # The PAM module -if [[ $TARGET =~ debian|ubuntu ]]; then - cd $WORKSPACE/packages/$TARGET - rm -rf "$WORKSPACE/sdk/pam/build" - libpam_arvados_version=$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/pam/arvados_pam.egg-info/PKG-INFO) - test_package_presence libpam-arvados "$libpam_arvados_version" python - if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/sdk/pam libpam-arvados 'Curoverse, Inc.' 'python' "$libpam_arvados_version" "--url=https://arvados.org" "--description=PAM module for authenticating shell logins using Arvados API tokens" --depends libpam-python - fi -fi +fpm_build_virtualenv "libpam-arvados" "sdk/pam" # The FUSE driver -# Please see comment about --no-python-fix-name above; we stay consistent and do -# not omit the python- prefix first. -cd $WORKSPACE/packages/$TARGET -rm -rf "$WORKSPACE/services/fuse/build" -arvados_fuse_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/fuse/arvados_fuse.egg-info/PKG-INFO)} -test_package_presence "${PYTHON2_PKG_PREFIX}-arvados-fuse" "$arvados_fuse_version" python -if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/services/fuse "${PYTHON2_PKG_PREFIX}-arvados-fuse" 'Curoverse, Inc.' 'python' "$arvados_fuse_version" "--url=https://arvados.org" "--description=The Keep FUSE driver" --depends "${PYTHON2_PKG_PREFIX}-setuptools" -fi +fpm_build_virtualenv "arvados-fuse" "services/fuse" # The node manager -cd $WORKSPACE/packages/$TARGET -rm -rf "$WORKSPACE/services/nodemanager/build" -nodemanager_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/nodemanager/arvados_node_manager.egg-info/PKG-INFO)} -test_package_presence arvados-node-manager "$nodemanager_version" python -if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/services/nodemanager arvados-node-manager 'Curoverse, Inc.' 'python' "$nodemanager_version" "--url=https://arvados.org" "--description=The Arvados node manager" --depends "${PYTHON2_PKG_PREFIX}-setuptools" -fi - -# The Docker image cleaner -cd $WORKSPACE/packages/$TARGET -rm -rf "$WORKSPACE/services/dockercleaner/build" -dockercleaner_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/dockercleaner/arvados_docker_cleaner.egg-info/PKG-INFO)} -iteration="${ARVADOS_BUILDING_ITERATION:-3}" -test_package_presence arvados-docker-cleaner "$dockercleaner_version" python "$iteration" -if [[ "$?" == "0" ]]; then - fpm_build $WORKSPACE/services/dockercleaner arvados-docker-cleaner 'Curoverse, Inc.' 'python3' "$dockercleaner_version" "--url=https://arvados.org" "--description=The Arvados Docker image cleaner" --depends "${PYTHON3_PKG_PREFIX}-websocket-client = 0.37.0" --iteration "$iteration" -fi +fpm_build_virtualenv "arvados-node-manager" "services/nodemanager" # The Arvados crunchstat-summary tool -cd $WORKSPACE/packages/$TARGET -crunchstat_summary_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/tools/crunchstat-summary/crunchstat_summary.egg-info/PKG-INFO)} -iteration="${ARVADOS_BUILDING_ITERATION:-2}" -test_package_presence "$PYTHON2_PKG_PREFIX"-crunchstat-summary "$crunchstat_summary_version" python "$iteration" -if [[ "$?" == "0" ]]; then - rm -rf "$WORKSPACE/tools/crunchstat-summary/build" - fpm_build $WORKSPACE/tools/crunchstat-summary ${PYTHON2_PKG_PREFIX}-crunchstat-summary 'Curoverse, Inc.' 'python' "$crunchstat_summary_version" "--url=https://arvados.org" "--description=Crunchstat-summary reads Arvados Crunch log files and summarize resource usage" --iteration "$iteration" -fi - -# Forked libcloud -if test_package_presence "$PYTHON2_PKG_PREFIX"-apache-libcloud "$LIBCLOUD_PIN" python 2 -then - LIBCLOUD_DIR=$(mktemp -d) - ( - cd $LIBCLOUD_DIR - git clone $DASHQ_UNLESS_DEBUG https://github.com/curoverse/libcloud.git . - git checkout $DASHQ_UNLESS_DEBUG apache-libcloud-$LIBCLOUD_PIN - # libcloud is absurdly noisy without -q, so force -q here - OLD_DASHQ_UNLESS_DEBUG=$DASHQ_UNLESS_DEBUG - DASHQ_UNLESS_DEBUG=-q - handle_python_package - DASHQ_UNLESS_DEBUG=$OLD_DASHQ_UNLESS_DEBUG - ) - - # libcloud >= 2.3.0 now requires python-requests 2.4.3 or higher, otherwise - # it throws - # ImportError: No module named packages.urllib3.poolmanager - # when loaded. We only see this problem on ubuntu1404, because that is our - # only supported distribution that ships with a python-requests older than - # 2.4.3. - fpm_build $LIBCLOUD_DIR "$PYTHON2_PKG_PREFIX"-apache-libcloud "" python "" --iteration 2 --depends 'python-requests >= 2.4.3' - rm -rf $LIBCLOUD_DIR -fi - -# Python 2 dependencies -declare -a PIP_DOWNLOAD_SWITCHES=(--no-deps) -# Add --no-use-wheel if this pip knows it. -pip wheel --help >/dev/null 2>&1 -case "$?" in - 0) PIP_DOWNLOAD_SWITCHES+=(--no-use-wheel) ;; - 2) ;; - *) echo "WARNING: `pip wheel` test returned unknown exit code $?" ;; -esac - -while read -r line || [[ -n "$line" ]]; do -# echo "Text read from file: $line" - if [[ "$line" =~ ^# ]]; then - continue - fi - IFS='|'; arr=($line); unset IFS +fpm_build_virtualenv "crunchstat-summary" "tools/crunchstat-summary" - dist=${arr[0]} +# The Python SDK - Python3 package +fpm_build_virtualenv "arvados-python-client" "sdk/python" "python3" - IFS=',';dists=($dist); unset IFS - - MATCH=0 - for d in "${dists[@]}"; do - if [[ "$d" == "$TARGET" ]] || [[ "$d" == "all" ]]; then - MATCH=1 - fi - done - - if [[ "$MATCH" != "1" ]]; then - continue - fi - name=${arr[1]} - version=${arr[2]} - iteration=${arr[3]} - pkgtype=${arr[4]} - arch=${arr[5]} - extra=${arr[6]} - declare -a 'extra_arr=('"$extra"')' - - if [[ "$FORMAT" == "rpm" ]]; then - if [[ "$arch" == "all" ]]; then - arch="noarch" - fi - if [[ "$arch" == "amd64" ]]; then - arch="x86_64" - fi - fi - - if [[ "$pkgtype" == "python" ]]; then - outname=$(echo "$name" | sed -e 's/^python-//' -e 's/_/-/g' -e "s/^/${PYTHON2_PKG_PREFIX}-/") - else - outname=$(echo "$name" | sed -e 's/^python-//' -e 's/_/-/g' -e "s/^/${PYTHON3_PKG_PREFIX}-/") - fi +# The Docker image cleaner +fpm_build_virtualenv "arvados-docker-cleaner" "services/dockercleaner" "python3" - if [[ -n "$ONLY_BUILD" ]] && [[ "$outname" != "$ONLY_BUILD" ]] ; then - continue - fi +# The cwltest package, which lives out of tree +cd "$WORKSPACE" +if [[ -e "$WORKSPACE/cwltest" ]]; then + rm -rf "$WORKSPACE/cwltest" +fi +git clone https://github.com/common-workflow-language/cwltest.git +# signal to our build script that we want a cwltest executable installed in /usr/bin/ +mkdir cwltest/bin && touch cwltest/bin/cwltest +fpm_build_virtualenv "cwltest" "cwltest" +rm -rf "$WORKSPACE/cwltest" - case "$name" in - httplib2|google-api-python-client) - test_package_presence $outname $version $pkgtype $iteration $arch - if [[ "$?" == "0" ]]; then - # Work around 0640 permissions on some package files. - # See #7591 and #7991. - pyfpm_workdir=$(mktemp --tmpdir -d pyfpm-XXXXXX) && ( - set -e - cd "$pyfpm_workdir" - pip install "${PIP_DOWNLOAD_SWITCHES[@]}" --download . "$name==$version" - # Sometimes pip gives us a tarball, sometimes a zip file... - DOWNLOADED=`ls $name-*` - [[ "$DOWNLOADED" =~ ".tar" ]] && tar -xf $DOWNLOADED - [[ "$DOWNLOADED" =~ ".zip" ]] && unzip $DOWNLOADED - cd "$name"-*/ - "python$PYTHON2_VERSION" setup.py $DASHQ_UNLESS_DEBUG egg_info build - chmod -R go+rX . - set +e - fpm_build . "$outname" "" "$pkgtype" "$version" --iteration "$iteration" "${extra_arr[@]}" - # The upload step uses the package timestamp to determine - # if it is new. --no-clobber plays nice with that. - mv --no-clobber "$outname"*.$FORMAT "$WORKSPACE/packages/$TARGET" - ) - if [ 0 != "$?" ]; then - echo "ERROR: $name build process failed" - EXITCODE=1 - fi - if [ -n "$pyfpm_workdir" ]; then - rm -rf "$pyfpm_workdir" - fi - fi - ;; - *) - test_package_presence $outname $version $pkgtype $iteration $arch - if [[ "$?" == "0" ]]; then - fpm_build "$name" "$outname" "" "$pkgtype" "$version" --iteration "$iteration" "${extra_arr[@]}" - fi - ;; - esac - -done <`dirname "$(readlink -f "$0")"`"/build.list" +calculate_go_package_version arvados_server_version cmd/arvados-server +arvados_server_iteration=$(default_iteration "arvados-server" "$arvados_server_version" "go") # Build the API server package test_rails_package_presence arvados-api-server "$WORKSPACE/services/api" @@ -568,7 +365,7 @@ if [[ "$?" == "0" ]]; then handle_rails_package arvados-api-server "$WORKSPACE/services/api" \ "$WORKSPACE/agpl-3.0.txt" --url="https://arvados.org" \ --description="Arvados API server - Arvados is a free and open source platform for big data science." \ - --license="GNU Affero General Public License, version 3.0" + --license="GNU Affero General Public License, version 3.0" --depends "arvados-server = ${arvados_server_version}-${arvados_server_iteration}" fi # Build the workbench server package @@ -576,6 +373,22 @@ test_rails_package_presence arvados-workbench "$WORKSPACE/apps/workbench" if [[ "$?" == "0" ]] ; then ( set -e + + # The workbench package has a build-time dependency on the arvados-server + # package for config manipulation, so install it first. + cd $WORKSPACE/cmd/arvados-server + get_complete_package_name arvados_server_pkgname arvados-server ${arvados_server_version} go + + arvados_server_pkg_path="$WORKSPACE/packages/$TARGET/${arvados_server_pkgname}" + if [[ ! -e ${arvados_server_pkg_path} ]]; then + arvados_server_pkg_path="$WORKSPACE/packages/$TARGET/processed/${arvados_server_pkgname}" + fi + if [[ "$FORMAT" == "deb" ]]; then + dpkg -i ${arvados_server_pkg_path} + else + rpm -i ${arvados_server_pkg_path} + fi + cd "$WORKSPACE/apps/workbench" # We need to bundle to be ready even when we build a package without vendor directory @@ -588,17 +401,17 @@ if [[ "$?" == "0" ]] ; then rm -rf tmp mkdir tmp - # Set up application.yml and production.rb so that asset precompilation works - \cp config/application.yml.example config/application.yml -f - \cp config/environments/production.rb.example config/environments/production.rb -f - sed -i 's/secret_token: ~/secret_token: xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx/' config/application.yml - sed -i 's/keep_web_url: false/keep_web_url: exampledotcom/' config/application.yml + # Set up an appropriate config.yml + arvados-server config-dump -config <(cat /etc/arvados/config.yml 2>/dev/null || echo "Clusters: {zzzzz: {}}") > /tmp/x + mkdir -p /etc/arvados/ + mv /tmp/x /etc/arvados/config.yml + perl -p -i -e 'BEGIN{undef $/;} s/WebDAV(.*?):\n( *)ExternalURL: ""/WebDAV$1:\n$2ExternalURL: "example.com"/g' /etc/arvados/config.yml - RAILS_ENV=production RAILS_GROUPS=assets bundle exec rake npm:install >/dev/null - RAILS_ENV=production RAILS_GROUPS=assets bundle exec rake assets:precompile >/dev/null + RAILS_ENV=production RAILS_GROUPS=assets bundle exec rake npm:install >"$STDOUT_IF_DEBUG" + RAILS_ENV=production RAILS_GROUPS=assets bundle exec rake assets:precompile >"$STDOUT_IF_DEBUG" # Remove generated configuration files so they don't go in the package. - rm config/application.yml config/environments/production.rb + rm -rf /etc/arvados/ ) if [[ "$?" != "0" ]]; then @@ -608,7 +421,7 @@ if [[ "$?" == "0" ]] ; then handle_rails_package arvados-workbench "$WORKSPACE/apps/workbench" \ "$WORKSPACE/agpl-3.0.txt" --url="https://arvados.org" \ --description="Arvados Workbench - Arvados is a free and open source platform for big data science." \ - --license="GNU Affero General Public License, version 3.0" + --license="GNU Affero General Public License, version 3.0" --depends "arvados-server = ${arvados_server_version}-${arvados_server_iteration}" fi fi