X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a95f899d7ac84f29b3d019aa410d265bb40833e5..b54478ea1b7c8aaeaf565d591f32769bcdc09b8f:/sdk/cli/bin/crunch-job diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job index 39238b0fc6..e0aff312cc 100755 --- a/sdk/cli/bin/crunch-job +++ b/sdk/cli/bin/crunch-job @@ -355,6 +355,7 @@ my @jobstep_done = (); my @jobstep_tomerge = (); my $jobstep_tomerge_level = 0; my $squeue_checked = 0; +my $sinfo_checked = 0; my $latest_refresh = scalar time; @@ -1401,6 +1402,37 @@ sub check_squeue } } +sub check_sinfo +{ + # If a node fails in a multi-node "srun" call during job setup, the call + # may hang instead of exiting with a nonzero code. This function checks + # "sinfo" for the health of the nodes that were allocated and ensures that + # they are all still in the "alloc" state. If a node that is allocated to + # this job is not in "alloc" state, then set please_freeze. + # + # This is only called from srun_sync() for node configuration. If a + # node fails doing actual work, there are other recovery mechanisms. + + # Do not call `sinfo` more than once every 15 seconds. + return if $sinfo_checked > time - 15; + $sinfo_checked = time; + + # The output format "%t" means output node states. + my @sinfo = `sinfo --nodes=\Q$ENV{SLURM_NODELIST}\E --noheader -o "%t"`; + if ($? != 0) + { + Log(undef, "warning: sinfo exit status $? ($!)"); + return; + } + chop @sinfo; + + foreach (@sinfo) + { + if ($_ != "alloc" && $_ != "alloc*") { + $main::please_freeze = 1; + } + } +} sub release_allocation { @@ -1906,7 +1938,6 @@ sub freezeunquote return $s; } - sub srun_sync { my $srunargs = shift; @@ -1961,6 +1992,7 @@ sub srun_sync if (!$busy || ($latest_refresh + 2 < scalar time)) { check_refresh_wanted(); check_squeue(); + check_sinfo(); } if (!$busy) { select(undef, undef, undef, 0.1);