X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a95c9948e04eab66cbb3aa4e93776c52956fc807..d10f3f21de0ad0871ab0d36ca8289a38e17e1846:/sdk/cwl/tests/test_submit.py diff --git a/sdk/cwl/tests/test_submit.py b/sdk/cwl/tests/test_submit.py index 3d6b91536a..d7ec1acbf8 100644 --- a/sdk/cwl/tests/test_submit.py +++ b/sdk/cwl/tests/test_submit.py @@ -84,7 +84,13 @@ def stubs(func): "uuid": "", "portable_data_hash": "99999999999999999999999999999998+99", "manifest_text": ". 99999999999999999999999999999998+99 0:0:file1.txt" - }} + }, + "99999999999999999999999999999994+99": { + "uuid": "", + "portable_data_hash": "99999999999999999999999999999994+99", + "manifest_text": ". 99999999999999999999999999999994+99 0:0:expect_arvworkflow.cwl" + } + } stubs.api.collections().create.side_effect = functools.partial(collection_createstub, created_collections) stubs.api.collections().get.side_effect = functools.partial(collection_getstub, created_collections) @@ -151,17 +157,14 @@ def stubs(func): 'basename': 'blorp.txt', 'class': 'File', 'location': 'keep:169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', - "nameext": ".txt", - "nameroot": "blorp" + "size": 16 }}, 'z': {"value": {'basename': 'anonymous', 'class': 'Directory', 'listing': [ { 'basename': 'renamed.txt', 'class': 'File', 'location': - 'keep:99999999999999999999999999999998+99/file1.txt', - "nameext": ".txt", - "nameroot": "renamed" + 'keep:99999999999999999999999999999998+99/file1.txt' } ]}}, 'cwl:tool': '3fffdeaa75e018172e1b583425f4ebff+60/workflow.cwl#main', @@ -216,15 +219,12 @@ def stubs(func): 'basename': u'blorp.txt', 'class': 'File', 'location': u'keep:169f39d466a5438ac4a90e779bf750c7+53/blorp.txt', - "nameext": ".txt", - "nameroot": "blorp" + "size": 16 }, 'z': {'basename': 'anonymous', 'class': 'Directory', 'listing': [ {'basename': 'renamed.txt', 'class': 'File', - 'location': 'keep:99999999999999999999999999999998+99/file1.txt', - "nameext": ".txt", - "nameroot": "renamed" + 'location': 'keep:99999999999999999999999999999998+99/file1.txt' } ]} }, @@ -245,7 +245,8 @@ def stubs(func): 'vcpus': 1, 'ram': 1024*1024*1024 }, - "properties": {} + 'use_existing': True, + 'properties': {} } stubs.expect_workflow_uuid = "zzzzz-7fd4e-zzzzzzzzzzzzzzz" @@ -498,6 +499,7 @@ class TestSubmit(unittest.TestCase): expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', '--disable-reuse', '--on-error=continue', '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + expect_container["use_existing"] = False stubs.api.container_requests().create.assert_called_with( body=JsonDiffMatcher(expect_container)) @@ -705,7 +707,8 @@ class TestSubmit(unittest.TestCase): 'vcpus': 1, 'ram': 1073741824 }, - "properties": {} + 'use_existing': True, + 'properties': {} } stubs.api.container_requests().create.assert_called_with( @@ -820,7 +823,8 @@ class TestSubmit(unittest.TestCase): 'vcpus': 1, 'ram': 1073741824 }, - "properties": { + 'use_existing': True, + 'properties': { "template_uuid": "962eh-7fd4e-gkbzl62qqtfig37" } } @@ -852,6 +856,31 @@ class TestSubmit(unittest.TestCase): stubs.expect_container_request_uuid + '\n') + @stubs + def test_submit_container_project(self, stubs): + project_uuid = 'zzzzz-j7d0g-zzzzzzzzzzzzzzz' + capture_stdout = cStringIO.StringIO() + try: + exited = arvados_cwl.main( + ["--submit", "--no-wait", "--api=containers", "--debug", "--project-uuid="+project_uuid, + "tests/wf/submit_wf.cwl", "tests/submit_test_job.json"], + capture_stdout, sys.stderr, api_client=stubs.api, keep_client=stubs.keep_client) + self.assertEqual(exited, 0) + except: + logging.exception("") + + expect_container = copy.deepcopy(stubs.expect_container_spec) + expect_container["owner_uuid"] = project_uuid + expect_container["command"] = ['arvados-cwl-runner', '--local', '--api=containers', '--no-log-timestamps', + '--enable-reuse', '--on-error=continue', '--project-uuid='+project_uuid, + '/var/lib/cwl/workflow.json#main', '/var/lib/cwl/cwl.input.json'] + + stubs.api.container_requests().create.assert_called_with( + body=JsonDiffMatcher(expect_container)) + self.assertEqual(capture_stdout.getvalue(), + stubs.expect_container_request_uuid + '\n') + + @stubs def test_submit_job_runner_image(self, stubs): capture_stdout = cStringIO.StringIO()