X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a6cba47c47dcd6a7f0bce99de9bbed6a87ef3102..937767712cbe0f6c9d33866c1ef0d9f2619cf71d:/sdk/go/arvados/fs_collection.go

diff --git a/sdk/go/arvados/fs_collection.go b/sdk/go/arvados/fs_collection.go
index 00f7ee73e3..0233826a72 100644
--- a/sdk/go/arvados/fs_collection.go
+++ b/sdk/go/arvados/fs_collection.go
@@ -16,6 +16,7 @@ import (
 	"strconv"
 	"strings"
 	"sync"
+	"sync/atomic"
 	"time"
 )
 
@@ -37,9 +38,6 @@ type CollectionFileSystem interface {
 
 	// Total data bytes in all files.
 	Size() int64
-
-	// Memory consumed by buffered file data.
-	memorySize() int64
 }
 
 type collectionFileSystem struct {
@@ -49,11 +47,9 @@ type collectionFileSystem struct {
 
 // FileSystem returns a CollectionFileSystem for the collection.
 func (c *Collection) FileSystem(client apiClient, kc keepClient) (CollectionFileSystem, error) {
-	var modTime time.Time
-	if c.ModifiedAt == nil {
+	modTime := c.ModifiedAt
+	if modTime.IsZero() {
 		modTime = time.Now()
-	} else {
-		modTime = *c.ModifiedAt
 	}
 	fs := &collectionFileSystem{
 		uuid: c.UUID,
@@ -110,16 +106,71 @@ func (fs *collectionFileSystem) newNode(name string, perm os.FileMode, modTime t
 				inodes: make(map[string]inode),
 			},
 		}, nil
-	} else {
-		return &filenode{
-			fs: fs,
-			fileinfo: fileinfo{
-				name:    name,
-				mode:    perm & ^os.ModeDir,
-				modTime: modTime,
-			},
-		}, nil
 	}
+	return &filenode{
+		fs: fs,
+		fileinfo: fileinfo{
+			name:    name,
+			mode:    perm & ^os.ModeDir,
+			modTime: modTime,
+		},
+	}, nil
+}
+
+func (fs *collectionFileSystem) Child(name string, replace func(inode) (inode, error)) (inode, error) {
+	return fs.rootnode().Child(name, replace)
+}
+
+func (fs *collectionFileSystem) FS() FileSystem {
+	return fs
+}
+
+func (fs *collectionFileSystem) FileInfo() os.FileInfo {
+	return fs.rootnode().FileInfo()
+}
+
+func (fs *collectionFileSystem) IsDir() bool {
+	return true
+}
+
+func (fs *collectionFileSystem) Lock() {
+	fs.rootnode().Lock()
+}
+
+func (fs *collectionFileSystem) Unlock() {
+	fs.rootnode().Unlock()
+}
+
+func (fs *collectionFileSystem) RLock() {
+	fs.rootnode().RLock()
+}
+
+func (fs *collectionFileSystem) RUnlock() {
+	fs.rootnode().RUnlock()
+}
+
+func (fs *collectionFileSystem) Parent() inode {
+	return fs.rootnode().Parent()
+}
+
+func (fs *collectionFileSystem) Read(_ []byte, ptr filenodePtr) (int, filenodePtr, error) {
+	return 0, ptr, ErrInvalidOperation
+}
+
+func (fs *collectionFileSystem) Write(_ []byte, ptr filenodePtr) (int, filenodePtr, error) {
+	return 0, ptr, ErrInvalidOperation
+}
+
+func (fs *collectionFileSystem) Readdir() ([]os.FileInfo, error) {
+	return fs.rootnode().Readdir()
+}
+
+func (fs *collectionFileSystem) SetParent(parent inode, name string) {
+	fs.rootnode().SetParent(parent, name)
+}
+
+func (fs *collectionFileSystem) Truncate(int64) error {
+	return ErrInvalidOperation
 }
 
 func (fs *collectionFileSystem) Sync() error {
@@ -178,10 +229,10 @@ func (fs *collectionFileSystem) Flush(path string, shortBlocks bool) error {
 	return dn.flush(context.TODO(), names, flushOpts{sync: false, shortBlocks: shortBlocks})
 }
 
-func (fs *collectionFileSystem) memorySize() int64 {
+func (fs *collectionFileSystem) MemorySize() int64 {
 	fs.fileSystem.root.Lock()
 	defer fs.fileSystem.root.Unlock()
-	return fs.fileSystem.root.(*dirnode).memorySize()
+	return fs.fileSystem.root.(*dirnode).MemorySize()
 }
 
 func (fs *collectionFileSystem) MarshalManifest(prefix string) (string, error) {
@@ -513,8 +564,6 @@ func (fn *filenode) Write(p []byte, startPtr filenodePtr) (n int, ptr filenodePt
 				seg.Truncate(len(cando))
 				fn.memsize += int64(len(cando))
 				fn.segments[cur] = seg
-				cur++
-				prev++
 			}
 		}
 
@@ -569,7 +618,6 @@ func (fn *filenode) pruneMemSegments() {
 				// A new seg.buf has been allocated.
 				return
 			}
-			seg.flushing = nil
 			if err != nil {
 				// TODO: stall (or return errors from)
 				// subsequent writes until flushing
@@ -649,6 +697,9 @@ type fnSegmentRef struct {
 // storedSegments that reference the relevant portions of the new
 // block.
 //
+// bufsize is the total data size in refs. It is used to preallocate
+// the correct amount of memory when len(refs)>1.
+//
 // If sync is false, commitBlock returns right away, after starting a
 // goroutine to do the writes, reacquire the filenodes' locks, and
 // swap out the *memSegments. Some filenodes' segments might get
@@ -656,63 +707,55 @@ type fnSegmentRef struct {
 // won't replace them.
 //
 // Caller must have write lock.
-func (dn *dirnode) commitBlock(ctx context.Context, refs []fnSegmentRef, sync bool) error {
+func (dn *dirnode) commitBlock(ctx context.Context, refs []fnSegmentRef, bufsize int, sync bool) error {
+	if len(refs) == 0 {
+		return nil
+	}
 	if err := ctx.Err(); err != nil {
 		return err
 	}
 	done := make(chan struct{})
-	block := make([]byte, 0, maxBlockSize)
+	var block []byte
 	segs := make([]*memSegment, 0, len(refs))
 	offsets := make([]int, 0, len(refs)) // location of segment's data within block
 	for _, ref := range refs {
 		seg := ref.fn.segments[ref.idx].(*memSegment)
-		if seg.flushing != nil && !sync {
+		if !sync && seg.flushingUnfinished() {
 			// Let the other flushing goroutine finish. If
 			// it fails, we'll try again next time.
+			close(done)
 			return nil
-		} else {
-			// In sync mode, we proceed regardless of
-			// whether another flush is in progress: It
-			// can't finish before we do, because we hold
-			// fn's lock until we finish our own writes.
 		}
+		// In sync mode, we proceed regardless of
+		// whether another flush is in progress: It
+		// can't finish before we do, because we hold
+		// fn's lock until we finish our own writes.
 		seg.flushing = done
 		offsets = append(offsets, len(block))
-		block = append(block, seg.buf...)
+		if len(refs) == 1 {
+			block = seg.buf
+		} else if block == nil {
+			block = append(make([]byte, 0, bufsize), seg.buf...)
+		} else {
+			block = append(block, seg.buf...)
+		}
 		segs = append(segs, seg)
 	}
+	blocksize := len(block)
 	dn.fs.throttle().Acquire()
 	errs := make(chan error, 1)
 	go func() {
 		defer close(done)
 		defer close(errs)
-		locked := map[*filenode]bool{}
 		locator, _, err := dn.fs.PutB(block)
 		dn.fs.throttle().Release()
-		{
-			if !sync {
-				for _, name := range dn.sortedNames() {
-					if fn, ok := dn.inodes[name].(*filenode); ok {
-						fn.Lock()
-						defer fn.Unlock()
-						locked[fn] = true
-					}
-				}
-			}
-			defer func() {
-				for _, seg := range segs {
-					if seg.flushing == done {
-						seg.flushing = nil
-					}
-				}
-			}()
-		}
 		if err != nil {
 			errs <- err
 			return
 		}
 		for idx, ref := range refs {
 			if !sync {
+				ref.fn.Lock()
 				// In async mode, fn's lock was
 				// released while we were waiting for
 				// PutB(); lots of things might have
@@ -721,17 +764,15 @@ func (dn *dirnode) commitBlock(ctx context.Context, refs []fnSegmentRef, sync bo
 					// file segments have
 					// rearranged or changed in
 					// some way
+					ref.fn.Unlock()
 					continue
 				} else if seg, ok := ref.fn.segments[ref.idx].(*memSegment); !ok || seg != segs[idx] {
 					// segment has been replaced
+					ref.fn.Unlock()
 					continue
 				} else if seg.flushing != done {
 					// seg.buf has been replaced
-					continue
-				} else if !locked[ref.fn] {
-					// file was renamed, moved, or
-					// deleted since we called
-					// PutB
+					ref.fn.Unlock()
 					continue
 				}
 			}
@@ -739,18 +780,25 @@ func (dn *dirnode) commitBlock(ctx context.Context, refs []fnSegmentRef, sync bo
 			ref.fn.segments[ref.idx] = storedSegment{
 				kc:      dn.fs,
 				locator: locator,
-				size:    len(block),
+				size:    blocksize,
 				offset:  offsets[idx],
 				length:  len(data),
 			}
-			ref.fn.memsize -= int64(len(data))
+			// atomic is needed here despite caller having
+			// lock: caller might be running concurrent
+			// commitBlock() goroutines using the same
+			// lock, writing different segments from the
+			// same file.
+			atomic.AddInt64(&ref.fn.memsize, -int64(len(data)))
+			if !sync {
+				ref.fn.Unlock()
+			}
 		}
 	}()
 	if sync {
 		return <-errs
-	} else {
-		return nil
 	}
+	return nil
 }
 
 type flushOpts struct {
@@ -769,12 +817,9 @@ func (dn *dirnode) flush(ctx context.Context, names []string, opts flushOpts) er
 	cg := newContextGroup(ctx)
 	defer cg.Cancel()
 
-	goCommit := func(refs []fnSegmentRef) {
-		if len(refs) == 0 {
-			return
-		}
+	goCommit := func(refs []fnSegmentRef, bufsize int) {
 		cg.Go(func() error {
-			return dn.commitBlock(cg.Context(), refs, opts.sync)
+			return dn.commitBlock(cg.Context(), refs, bufsize, opts.sync)
 		})
 	}
 
@@ -808,11 +853,11 @@ func (dn *dirnode) flush(ctx context.Context, names []string, opts flushOpts) er
 					node.segments[idx] = seg
 				case *memSegment:
 					if seg.Len() > maxBlockSize/2 {
-						goCommit([]fnSegmentRef{{node, idx}})
+						goCommit([]fnSegmentRef{{node, idx}}, seg.Len())
 						continue
 					}
 					if pendingLen+seg.Len() > maxBlockSize {
-						goCommit(pending)
+						goCommit(pending, pendingLen)
 						pending = nil
 						pendingLen = 0
 					}
@@ -825,20 +870,20 @@ func (dn *dirnode) flush(ctx context.Context, names []string, opts flushOpts) er
 		}
 	}
 	if opts.shortBlocks {
-		goCommit(pending)
+		goCommit(pending, pendingLen)
 	}
 	return cg.Wait()
 }
 
 // caller must have write lock.
-func (dn *dirnode) memorySize() (size int64) {
+func (dn *dirnode) MemorySize() (size int64) {
 	for _, name := range dn.sortedNames() {
 		node := dn.inodes[name]
 		node.Lock()
 		defer node.Unlock()
 		switch node := node.(type) {
 		case *dirnode:
-			size += node.memorySize()
+			size += node.MemorySize()
 		case *filenode:
 			for _, seg := range node.segments {
 				switch seg := seg.(type) {
@@ -1056,9 +1101,9 @@ func (dn *dirnode) loadManifest(txt string) error {
 				// situation might be rare anyway)
 				segIdx, pos = 0, 0
 			}
-			for next := int64(0); segIdx < len(segments); segIdx++ {
+			for ; segIdx < len(segments); segIdx++ {
 				seg := segments[segIdx]
-				next = pos + int64(seg.Len())
+				next := pos + int64(seg.Len())
 				if next <= offset || seg.Len() == 0 {
 					pos = next
 					continue
@@ -1192,13 +1237,26 @@ type segment interface {
 
 type memSegment struct {
 	buf []byte
-	// If flushing is not nil, then a) buf is being shared by a
-	// pruneMemSegments goroutine, and must be copied on write;
-	// and b) the flushing channel will close when the goroutine
-	// finishes, whether it succeeds or not.
+	// If flushing is not nil and not ready/closed, then a) buf is
+	// being shared by a pruneMemSegments goroutine, and must be
+	// copied on write; and b) the flushing channel will close
+	// when the goroutine finishes, whether it succeeds or not.
 	flushing <-chan struct{}
 }
 
+func (me *memSegment) flushingUnfinished() bool {
+	if me.flushing == nil {
+		return false
+	}
+	select {
+	case <-me.flushing:
+		me.flushing = nil
+		return false
+	default:
+		return true
+	}
+}
+
 func (me *memSegment) Len() int {
 	return len(me.buf)
 }