X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a5f72c4ae2786377f32c539cc925d1bb11a0764e..refs/heads/16377-test-check:/doc/user/index.html.textile.liquid diff --git a/doc/user/index.html.textile.liquid b/doc/user/index.html.textile.liquid index b108ff7077..909394ef47 100644 --- a/doc/user/index.html.textile.liquid +++ b/doc/user/index.html.textile.liquid @@ -1,23 +1,22 @@ --- layout: default navsection: userguide -title: Welcome to Arvados! +title: Welcome to Arvados! ... +{% comment %} +Copyright (C) The Arvados Authors. All rights reserved. -_If you are new to Arvados, please read the "Getting Started":{{site.baseurl}}/start/index.html guide for a quick introduction to working with Arvados._ +SPDX-License-Identifier: CC-BY-SA-3.0 +{% endcomment %} -This guide provides a reference for using Arvados to solve big data bioinformatics problems, including: +This guide provides a reference for using Arvados to solve scientific big data problems, including: * Robust storage of very large files, such as whole genome sequences, using the "Arvados Keep":{{site.baseurl}}/user/tutorials/tutorial-keep.html content-addressable cluster file system. -* Running compute-intensive genomic analysis pipelines, such as alignment and variant calls using the "Arvados Crunch":{{site.baseurl}}/user/tutorials/intro-crunch.html cluster compute engine. -* Storing and querying metadata about genome sequence files, such as human subjects and their phenotypic traits using the "Arvados Metadata Database.":{{site.baseurl}}/user/topics/tutorial-trait-search.html -* Accessing, organizing, and sharing data, pipelines and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application. +* Running compute-intensive scientific analysis pipelines, such as genomic alignment and variant calls using the "Arvados Crunch":{{site.baseurl}}/user/tutorials/intro-crunch.html cluster compute engine. +* Accessing, organizing, and sharing data, workflows and results using the "Arvados Workbench":{{site.baseurl}}/user/getting_started/workbench.html web application. +* Running an analysis using multiple clusters (HPC, cloud, or hybrid) with "Federated Multi-Cluster Workflows":{{site.baseurl}}/user/cwl/federated-workflows.html . -This User Guide goes into more depth than the "Getting Started guide":{{site.baseurl}}/start/index.html, covers how to develop your own pipelines in addition to using pre-existing pipelines, covers the Arvados commandline tools in addition to the Workbench graphical interface to Arvados, and can be referenced in any order. - -The examples in this guide use the Arvados instance located at https://{{ site.arvados_workbench_host }}. If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide. - -Curoverse maintains a public Arvados instance located at https://workbench.qr1hi.arvadosapi.com/. You must have an account in order to use this service. If you would like to request an account, please send an email to "arvados@curoverse.com":mailto:arvados@curoverse.com. +The examples in this guide use the public Arvados instance located at {{site.arvados_workbench_host}}. If you are using a different Arvados instance replace @{{ site.arvados_workbench_host }}@ with your private instance in all of the examples in this guide. h2. Typographic conventions