X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/a3222e35cda68c8e48a17921c33ac37ecb5c3bac..04700fca9ad96c23119b474ba1f472b9d1da2b20:/crunch_scripts/split-fastq.py

diff --git a/crunch_scripts/split-fastq.py b/crunch_scripts/split-fastq.py
index 253dd22ea8..17aabf2930 100755
--- a/crunch_scripts/split-fastq.py
+++ b/crunch_scripts/split-fastq.py
@@ -119,10 +119,11 @@ for s in inp.all_streams():
                     splitfastq(p)
                 else:
                     for i in xrange(0, len(p)):
-                        m = p[i]["reader"].as_manifest()[1:]
-                        manifest_list.append(["./_" + str(piece), m[:-1]])
+                        m = p[i]["reader"].as_manifest().split()
+                        m[0] = "./_" + str(piece)
+                        manifest_list.append(m)
                     piece += 1
 
-manifest_text = "\n".join(" ".join(m) for m in manifest_list)
+manifest_text = "\n".join(" ".join(m) for m in manifest_list) + "\n"
 
 arvados.current_task().set_output(manifest_text)